PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G051200.1.p
Common NameGLYMA_12G051200, LOC100810942
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 398aa    MW: 45143.3 Da    PI: 7.0042
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G051200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10194252563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+     +++e+
  Glyma.12G051200.1.p 194 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTHGMTAEN 252
                          9********************************************99998877776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014476.02E-5124132No hitNo description
SuperFamilySSF1014476.02E-5180276No hitNo description
SMARTSM003383.2E-16190254IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749192255IPR004827Basic-leucine zipper domain
PfamPF001703.7E-9194248IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.8E-11194245No hitNo description
Gene3DG3DSA:1.20.5.1705.5E-11194247No hitNo description
CDDcd147039.86E-24195244No hitNo description
SuperFamilySSF1014476.02E-5304388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MRKEETRGAL QRWGTWNGIS DPFCVLNLIL YCYRLQIWWA MDRDNKSPPP SSLYVKSSSS  60
SFSHDDISAM PENPPKNRGH RRAHSEIITL PDDLSFDADL LPDDDNDLLS LYLQFDQLDS  120
SSLPPPPPPP PPHNNINERS TRVRHQHSHS MDGSIHLEML LSAASAADDV SGGIDTKKAM  180
SADKLAELAL VDPKRAKRIW ANRQSAARSK ERKMRYISEL ERKVQTLQTE ATSLSAQLTL  240
LQRDTHGMTA ENSELKLRLQ TMEQQVHLQD ALNDALKEEI QHLKALTGQV MPNGGPVNFA  300
SFGGGQQFYP NNQAMHTLLA AQKFQQLQIH SQKQQQHQLQ QQQQFQHQLQ QQQQFHQQQQ  360
QLQLQQQLQQ QQQQQQQQQQ QQTAATGTVT STNGGHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.403880.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G051200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0929230.0BT092923.1 Soybean clone JCVI-FLGm-23G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541156.20.0probable transcription factor PosF21
SwissprotQ040881e-111POF21_ARATH; Probable transcription factor PosF21
TrEMBLK7LT540.0K7LT54_SOYBN; Uncharacterized protein
STRINGGLYMA12G05520.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.19e-89bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]