PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G050100.3.p

Common Name

GLYMA_12G050100, LOC100793770

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 972aa MW: 107667 Da PI: 6.3922

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G050100.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.9e-29	600	650	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Glyma.12G050100.3.p 600 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.234	582	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	602	650	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.3E-22	868	950	No hit	No description
SuperFamily	SSF54277	1.8E-21	868	955	No hit	No description
PROSITE profile	PS51745	21.363	871	953	IPR000270	PB1 domain
SMART	SM00666	2.1E-21	871	953	IPR000270	PB1 domain
CDD	cd06407	1.15E-29	872	952	No hit	No description
Pfam	PF00564	4.0E-16	874	952	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MEDHVSPEGK EVSCCAPPGA QLEESTSVDG GKKNSSSEDM FSNFSELMNF DTYAGWSNSP 60 SMTDLSVANV FSLFSSAPYP PPDGLNLVEQ SNGSFFMTED SEFHNGMESS PSCVERVIFQ 120 QMDIHLGFLD EANDSNNLDS KEKLNGKSQQ VNTSDMCNYI ISRSPGRSLD DRMLRALSFF 180 MESADEGMLA QVWVPTKHGD EFILSTSQQP YLLDPKLAGY REVSRAFTFS AEGKTRTCPG 240 LPARVFISHV PEWTSNVGYY NKTEYLRLEH AKNHEIRGSI ALPISDVHSQ VPCAVLELVT 300 TKEKANFDRE LEIFSHALQL VNLRTSMPPR LLPQCLSSNK RVALTEIIDV LRAMCHAHRL 360 PLALTWIPCC YSEGIRDETE RIRIKEGHTS SNEKCVLCIE ESACYVNDGG VGGFVHACIE 420 HHLEEGQGIA GKALQSNHPF FYTDVKTYDI GEYPLVHHAR KYNLNAAVAI RLRSTYTNGD 480 DYILEFFLPV NMTGSSEQQL LLDNLSGTMR RICKSLRTVS DAELTGIDGS QGGFPKEKVS 540 GFFPMSRRNS EIAFINGDHD SVQKMSMKTS NMRNNGTEAV HSQAMNGSRK QVEKKRSTVE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKFDPYTGGF IAGGSIMQEI DAHKYLVFPK KSSVKDPKPA TQKTVSVAPA 720 PGSTRENSTI KLNDDESVCL VRNKFVHSRN VLNSNSSKGE LKKDNVSSDD CCDDSKSMAM 780 NDGSCQKSCL WTKTQDCPEQ TCSISLVTDE VEVGVDRVEG ADEHNHPTSS STTHSSNGSG 840 SMMHGSSSCS QSFEKQKHSK VKSNCVDSGS KMIVKASYRG DTIRFKFDPS SGCFQLYEEV 900 ATRFKLQNGS FQLKYLDDEE EWVMLVNDSD LQECTEILGD IGTRFVKFLV RDVPCVFRSR 960 GSNSCFLSDS S*

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MEDHVSPEGK EVSCCAPPGA QLEESTSVDG GKKNSSSEDM FSNFSELMNF DTYAGWSNSP  60
SMTDLSVANV FSLFSSAPYP PPDGLNLVEQ SNGSFFMTED SEFHNGMESS PSCVERVIFQ  120
QMDIHLGFLD EANDSNNLDS KEKLNGKSQQ VNTSDMCNYI ISRSPGRSLD DRMLRALSFF  180
MESADEGMLA QVWVPTKHGD EFILSTSQQP YLLDPKLAGY REVSRAFTFS AEGKTRTCPG  240
LPARVFISHV PEWTSNVGYY NKTEYLRLEH AKNHEIRGSI ALPISDVHSQ VPCAVLELVT  300
TKEKANFDRE LEIFSHALQL VNLRTSMPPR LLPQCLSSNK RVALTEIIDV LRAMCHAHRL  360
PLALTWIPCC YSEGIRDETE RIRIKEGHTS SNEKCVLCIE ESACYVNDGG VGGFVHACIE  420
HHLEEGQGIA GKALQSNHPF FYTDVKTYDI GEYPLVHHAR KYNLNAAVAI RLRSTYTNGD  480
DYILEFFLPV NMTGSSEQQL LLDNLSGTMR RICKSLRTVS DAELTGIDGS QGGFPKEKVS  540
GFFPMSRRNS EIAFINGDHD SVQKMSMKTS NMRNNGTEAV HSQAMNGSRK QVEKKRSTVE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LDSVQGVEGG LKFDPYTGGF IAGGSIMQEI DAHKYLVFPK KSSVKDPKPA TQKTVSVAPA  720
PGSTRENSTI KLNDDESVCL VRNKFVHSRN VLNSNSSKGE LKKDNVSSDD CCDDSKSMAM  780
NDGSCQKSCL WTKTQDCPEQ TCSISLVTDE VEVGVDRVEG ADEHNHPTSS STTHSSNGSG  840
SMMHGSSSCS QSFEKQKHSK VKSNCVDSGS KMIVKASYRG DTIRFKFDPS SGCFQLYEEV  900
ATRFKLQNGS FQLKYLDDEE EWVMLVNDSD LQECTEILGD IGTRFVKFLV RDVPCVFRSR  960
GSNSCFLSDS S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G050100.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235172	0.0	AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006592131.1	0.0	protein NLP9
Refseq	XP_014619984.1	0.0	protein NLP9
Refseq	XP_014619985.1	0.0	protein NLP9
Refseq	XP_014619986.1	0.0	protein NLP9
Refseq	XP_025980390.1	0.0	protein NLP9
Refseq	XP_028193553.1	0.0	protein NLP9-like
Refseq	XP_028193554.1	0.0	protein NLP9-like
Refseq	XP_028193555.1	0.0	protein NLP9-like
Refseq	XP_028193556.1	0.0	protein NLP9-like
Refseq	XP_028193557.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A445HLK6	0.0	A0A445HLK6_GLYSO; Protein NLP8 isoform A
TrEMBL	I1LQB5	0.0	I1LQB5_SOYBN; Uncharacterized protein
STRING	GLYMA12G05390.4	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G050100.3.p
Entrez Gene	100793770

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]