PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G048700.1.p | ||||||||
Common Name | GLYMA_12G048700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 316aa MW: 36667.9 Da PI: 7.7491 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.5e-14 | 46 | 125 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++l +p +f+++ +++ + +l +sg +W v++ +kk++ +++++GW+ F k+n + +f++F+++g ++f +v++f Glyma.12G048700.1.p 46 TKLLKVPEEFLKHLNEDLWS--NEVLIGPSGDKWLVTI--WKKGNDVYMKNGWSLFLKDNSVVLDEFFLFTYHGGNCF--HVQIFG 125 56789999999555444223..45789***********..*********************************99999..999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.898 | 34 | 127 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.29E-15 | 34 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-16 | 38 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.6E-9 | 39 | 127 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.52E-11 | 39 | 124 | No hit | No description |
Pfam | PF02362 | 1.5E-10 | 46 | 125 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-6 | 238 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-6 | 242 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MYLYQVSFQF LFHCSSITMG DFSLHENNMD YHQDNLAVFF TIIKNTKLLK VPEEFLKHLN 60 EDLWSNEVLI GPSGDKWLVT IWKKGNDVYM KNGWSLFLKD NSVVLDEFFL FTYHGGNCFH 120 VQIFGGNGLE RLCLEETRQE QAAIPQFFDL PFSNNASLFD GYEIKKTRQE QASIPSLART 180 KNKSKQRKTS AGSLHHHESK SCQEDLPFCN KALLSKDFPK PMSSIKIESS EACKLVESFT 240 SRDPHWKHLM TKCNVEDHCT LHIATEFACK YILEAVKQII LRNSEGKFWE VEVACLRYQN 300 KRYTQIYDRM GKIRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G048700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT321660 | 0.0 | KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539033.2 | 0.0 | B3 domain-containing protein Os11g0197600 | ||||
Refseq | XP_028186698.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | K7LT30 | 0.0 | K7LT30_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G05261.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14239 | 9 | 14 | Representative plant | OGRP11590 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 9e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G048700.1.p |