PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G042900.1.p
Common NameGLYMA_12G042900, LOC100785292
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 101aa    MW: 11375.8 Da    PI: 9.6761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G042900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091558344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   +l+ +a +++ ++   +W  +a+ +g g+++ ++k ++
  Glyma.12G042900.1.p 15 SWTPKQNKLFEKALAKYDKDtpdRWQNVAKAVG-GKSADEVKRHY 58
                         7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-5863IPR009057Homeodomain-like
PROSITE profilePS5129310.5891166IPR017884SANT domain
SMARTSM007171.8E-81264IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-131470IPR009057Homeodomain-like
PfamPF002493.9E-81558IPR001005SANT/Myb domain
CDDcd001676.92E-71562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASSSLSKQK ASDSSWTPKQ NKLFEKALAK YDKDTPDRWQ NVAKAVGGKS ADEVKRHYEI  60
LLEDLRHIES GHVPLPKYKS TGSSTNVEEE ERLLKYLKLN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-33699192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G042900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540679.17e-68protein RADIALIS-like 4
RefseqXP_028194174.17e-68protein RADIALIS-like 4
SwissprotF4JVB86e-36RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445HKP92e-66A0A445HKP9_GLYSO; Protein RADIALIS-like 1
TrEMBLK7LSY92e-66K7LSY9_SOYBN; Uncharacterized protein
STRINGGLYMA12G04680.23e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]