PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G039100.1.p

Common Name

GLYMA_12G039100, LOC102662493

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 211aa MW: 23370.3 Da PI: 8.5773

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G039100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	154.2	9.2e-48	10	138	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++++CqdCGnqakkdC+++RCR CCk++gf+C+th++stW+p+++rr+++ +++++ + ++++kr++++ s+ Glyma.12G039100.1.p 10 KGSKCQDCGNQAKKDCEYSRCRSCCKNKGFNCQTHIRSTWIPVDRRRHQKLEQQQP------LQGDDTPKRHKHN-------PYSS---- 82 5689*****************************************964333332......2245566666653.......1122.... PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +le+ ++P+ +ss+a f+cv+v+s+d +e+aYq++v+igGhvf+G+LydqG+e+ Glyma.12G039100.1.p 83 -----SLEKFKFPAVMSSMASFSCVQVRSIDGTVNEIAYQATVNIGGHVFSGLLYDQGPEQ 138 .....234557**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-44	11	137	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.6E-25	13	55	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.9E-20	88	136	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEAAQEVVVK GSKCQDCGNQ AKKDCEYSRC RSCCKNKGFN CQTHIRSTWI PVDRRRHQKL 60 EQQQPLQGDD TPKRHKHNPY SSSLEKFKFP AVMSSMASFS CVQVRSIDGT VNEIAYQATV 120 NIGGHVFSGL LYDQGPEQSF NAKGGNIGPL DQQQNLNLWS VSIHTTRDGA SATMPPLSAT 180 AAQEPFFPPP HPFPLASFRP DMTYMSHPKP *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G039100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014620120.1	1e-159	protein SHI RELATED SEQUENCE 3
Refseq	XP_028192149.1	1e-159	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	5e-42	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A445HKH5	1e-158	A0A445HKH5_GLYSO; Protein SHI RELATED SEQUENCE 3
TrEMBL	I1LPZ1	1e-158	I1LPZ1_SOYBN; WBb225L1.6 protein
STRING	GLYMA12G04310.1	1e-159	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-44	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Glyma.12G039100.1.p
Entrez Gene	102662493