PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G036400.1.p

Common Name

GLYMA_12G036400, LOC780560

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 549aa MW: 60014.2 Da PI: 6.8487

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G036400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	6e-11	394	452	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ +a l++++ Glyma.12G036400.1.p 394 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQN 452 9*************************************************999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-17	390	454	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	392	455	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.45E-11	394	445	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-11	394	451	No hit	No description
Pfam	PF00170	2.1E-9	394	452	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.65E-24	395	446	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MGENEEAMQR LHFLKQPLNM EQLSIPQFNP SQMRARQHHH QNQFDGGNSN KRAGIPPSHP 60 HPIPPISPYS QIPVSRQHNN ISPTPTHTRS LSQPSFFSLD SLPPLSPSPF RDSSSTSVSE 120 AADVSMEDRD VSSHSLLPPS PFSRTLNNSN LPLPPRKAHR RSNSDIPFGF STVLQSSPPL 180 IPLRNPVSAK PAQLVKRETP WDRGVENNNN NNVEGSGEKK SPEGEVVDDL FSAYMNLDSF 240 DALNSSGTDD KNGGENRDDL DSRASGTKTN GGDSSDNEAE SSVNESGDGG VRQGGNEKRE 300 GMKRSAGGEI APTTRHYRSV SMDSFIGKLN FDEESPKLPP SPGQRSALMS PAGGIDGNSA 360 AFSLEFGNGE FSGPELKKIM ANEKLAEIAL IDPKRAKRIL ANRQSAARSK ERKMRYISEL 420 EHKVQTLQTE ATTLSAQLTL LQRDSAGLTN QNSELKFRLQ SMEQQAKLRD ALNEALTAEV 480 QRLKLATAEL SGDSHGSGCL IPQHSVNPLM FQQQQQPPTA SQQNIHLQQQ QQQQHQNGNA 540 NSNSDLKQ*

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MGENEEAMQR LHFLKQPLNM EQLSIPQFNP SQMRARQHHH QNQFDGGNSN KRAGIPPSHP  60
HPIPPISPYS QIPVSRQHNN ISPTPTHTRS LSQPSFFSLD SLPPLSPSPF RDSSSTSVSE  120
AADVSMEDRD VSSHSLLPPS PFSRTLNNSN LPLPPRKAHR RSNSDIPFGF STVLQSSPPL  180
IPLRNPVSAK PAQLVKRETP WDRGVENNNN NNVEGSGEKK SPEGEVVDDL FSAYMNLDSF  240
DALNSSGTDD KNGGENRDDL DSRASGTKTN GGDSSDNEAE SSVNESGDGG VRQGGNEKRE  300
GMKRSAGGEI APTTRHYRSV SMDSFIGKLN FDEESPKLPP SPGQRSALMS PAGGIDGNSA  360
AFSLEFGNGE FSGPELKKIM ANEKLAEIAL IDPKRAKRIL ANRQSAARSK ERKMRYISEL  420
EHKVQTLQTE ATTLSAQLTL LQRDSAGLTN QNSELKFRLQ SMEQQAKLRD ALNEALTAEV  480
QRLKLATAEL SGDSHGSGCL IPQHSVNPLM FQQQQQPPTA SQQNIHLQQQ QQQQHQNGNA  540
NSNSDLKQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.1489	0.0	cotyledon\| hypocotyl\| leaf\| meristem\| root\| seed coat\| somatic embryo\| stem\| vegetative bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G036400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001345592.1	0.0	bZIP transcription factor 21
TrEMBL	I1LPW5	0.0	I1LPW5_SOYBN; Uncharacterized protein
STRING	GLYMA12G04050.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2272	34	84
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-114	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G036400.1.p
Entrez Gene	780560

Publications ? help Back to Top
Liao Y, et al. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta, 2008. 228(2): p. 225-40 [PMID:18365246]