PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G022700.1.p | ||||||||
Common Name | GLYMA_12G022700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 34334.5 Da PI: 8.5721 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.9 | 1.5e-47 | 16 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPt+eel+++yLk+ v gkkl+ +vi ++iy+++PwdLp +k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkatg+d++ Glyma.12G022700.1.p 16 LPGFRFHPTEEELLDFYLKNMVVGKKLRY-DVIGFLNIYQHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRK 104 69**************************9.99***************8888899************************************ PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ +gl+ktLvfy+grap+g ktdWvm+eyrl Glyma.12G022700.1.p 105 IVTLsdPKRIIGLRKTLVFYQGRAPRGCKTDWVMNEYRL 143 *987666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-56 | 14 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.201 | 15 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MATMEDMNNM SGEITLPGFR FHPTEEELLD FYLKNMVVGK KLRYDVIGFL NIYQHDPWDL 60 PGLAKVGERE WYFFVPRDKK HGSGGRPNRT TEKGFWKATG SDRKIVTLSD PKRIIGLRKT 120 LVFYQGRAPR GCKTDWVMNE YRLPDNCKLP KEIVLCKIYR KATSLKVLEQ RAALEEEREM 180 KQMVGSPASP SSTDTMSFSS PQEEQNMPLP LLQHVLKKES ETEDMVVPKQ EKITNQLVLK 240 DTNKSTCGTS LQMPFGKEKL PDLQLPMLSD WTQDTFWAQL NSPWLQNFTP TNILNFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-45 | 4 | 161 | 3 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55748 | 0.0 | cotyledon| flower| leaf| meristem| pod| root| stem| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G022700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ028774 | 0.0 | DQ028774.1 Glycine max NAC domain protein NAC6 (NAC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236900.2 | 0.0 | NAC domain protein NAC6 | ||||
Refseq | XP_028195212.1 | 0.0 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 2e-97 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A445HJG3 | 0.0 | A0A445HJG3_GLYSO; NAC domain-containing protein 22 | ||||
TrEMBL | I1LPE9 | 0.0 | I1LPE9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G02540.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6214 | 32 | 51 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-106 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G022700.1.p |
Publications ? help Back to Top | |||
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