PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G018000.3.p
Common NameGLYMA_12G018000, LOC100798342
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 318aa    MW: 35383.7 Da    PI: 5.1685
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G018000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP871.4e-2767149271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Glyma.12G018000.3.p  67 SGRGLRQFSMK---VCEKVESrGRTTYNEVADELVAEfsepsnselppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 149
                          689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.4E-1254317IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.5E-4562154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-3466149IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.9E-2568149IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-2169150IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.12E-43154257IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.23E-42156263No hitNo description
SMARTSM011382.0E-67156315IPR014889Transcription factor DP, C-terminal
PfamPF087811.8E-41157269IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGDEEEEEVL GSGQSASTNS LPPPADSTLL KLNHLDIHAD DAVSHASLAS AKKKKRGGQR  60
AVGPDKSGRG LRQFSMKVCE KVESRGRTTY NEVADELVAE FSEPSNSELP PDQQQYDEKN  120
IRRRVYDALN VLMAMDIISK DKKEIQWRGL PRTTVNDIEE LKTERLGLRN RIEKKTAYLQ  180
ELEEQFVGLQ NLIQRNEQLY SSGNPPSGGV SLPFILVQTR PHATVEVEIS EDMQLVHFDF  240
NSTPFELHDD NYVLKAMKFG ERPLEDNMTH NLTDGGEGSS MSGLCQPQAP TILNVSNRPP  300
TSPPLPGILK ARVKQEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3460154193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.561260.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G018000.3.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942120.0BT094212.1 Soybean clone JCVI-FLGm-18G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357820.10.0transcription factor-like protein DPB-like isoform 2
RefseqXP_028195095.10.0transcription factor-like protein DPB isoform X3
SwissprotQ9FNY21e-140DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0R0HA710.0A0A0R0HA71_SOYBN; Uncharacterized protein
STRINGGLYMA12G02050.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137Transcription factor DP