PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G016400.2.p
Common NameGLYMA_12G016400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 374aa    MW: 41043.3 Da    PI: 7.9993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G016400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-10325427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                          +Cr+f+r G C+yG+rC++ H++
  Glyma.12G016400.2.p  3 DICRNFQR-GSCQYGERCRYLHVQ 25
                         69******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-4125IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MRDICRNFQR GSCQYGERCR YLHVQQQRKP NVNGFGGQSS SHQQQNTNPF GFGSGSGSQQ  60
QQKGNPFGFG KHNSSQLNGG PHSENKPNQY KPFENKWNRQ SSKPQQNGVK SENNPKQSEH  120
HICTDPENCK RQIAVDFEQE KPLWILTCYS HCKGAPCDIV GDISYEELRA SAYEDANRGM  180
SLQSIVEKER NILKSKLVEF DKLLSEPYKI PISSSLGSQT PQSIGANANP FSTSQSNGPL  240
SVSSFSQLST PLNMGFERPS APLTNTPTKP GFFGSGGNSL ASNTANLNSN GVFGVQSGPY  300
STPLDLKMFP GSTQETSTAF SNSGPTSMFQ TTPDVQLFQS QVEKVSVDPS IWLKEKWNPG  360
EIPEEAPPDT FVR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.250680.0flower| leaf| seed coat| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G016400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932070.0BT093207.1 Soybean clone JCVI-FLGm-17A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540090.10.0zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBLK7LSG80.0K7LSG8_SOYBN; Uncharacterized protein
STRINGGLYMA12G01905.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.23e-64C3H family protein