PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G012100.1.p | ||||||||
Common Name | GLYMA_12G012100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 248aa MW: 27740.3 Da PI: 7.5034 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 122.1 | 6.7e-38 | 36 | 241 | 1 | 219 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL ec++ + g++++a+ + +ls+laspdgd+mqR+a++f eALa ++a++ ++ k l+ +t + + e+ + klf++ P Glyma.12G012100.1.p 36 LINLLNECVKLTELGNFNAADVAFYHLSHLASPDGDSMQRVATCFIEALAYcQVAKNLRGVPKVLHLVKTLS--TPEQQLVKKLFFDFYP 123 6799*********************************************96378889999999997777763..667777899******* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 ++k++h ++Nq+I ea +g++ ++ + W +L++ L + p++ iT++++ +ke le++g L A++l pf+fn Glyma.12G012100.1.p 124 FIKIAHTITNQTIIEACKGKQP-------LMSLISWTNLIKCLKPSTPTCPKITITAIHE----KKEVLEKMGLHLGVEAQRLLFPFQFN 202 ********************97.......578899*********999999**********....9************************* PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219 + v+++le+l++e+L +k+gE la+++vlqlh+ll+++ + Glyma.12G012100.1.p 203 P-VVSSLENLDPETLPIKKGEPLAISSVLQLHSLLASDDD 241 *.799*****************************987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.033 | 10 | 247 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-35 | 36 | 241 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MQGVSRQPKL WTQVDSTSRG VRVQGMNWDD DERIRLINLL NECVKLTELG NFNAADVAFY 60 HLSHLASPDG DSMQRVATCF IEALAYCQVA KNLRGVPKVL HLVKTLSTPE QQLVKKLFFD 120 FYPFIKIAHT ITNQTIIEAC KGKQPLMSLI SWTNLIKCLK PSTPTCPKIT ITAIHEKKEV 180 LEKMGLHLGV EAQRLLFPFQ FNPVVSSLEN LDPETLPIKK GEPLAISSVL QLHSLLASDD 240 DDEMAKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-15 | 30 | 226 | 13 | 217 | Protein SCARECROW |
5b3h_A | 3e-15 | 30 | 226 | 12 | 216 | Protein SCARECROW |
5b3h_D | 3e-15 | 30 | 226 | 12 | 216 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G012100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028195049.1 | 1e-116 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0R0H9X9 | 0.0 | A0A0R0H9X9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G01470.2 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36001 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 4e-50 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G012100.1.p |