PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G003200.1.p | ||||||||
Common Name | GLYMA_12G003200, LOC100804181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40969.7 Da PI: 7.9467 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.7 | 1.1e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeel+++yLkkk++ +k+++ +vi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg Glyma.12G003200.1.p 9 VPPGFRFHPTDEELLHYYLKKKLSFQKFDM-DVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATG 97 69****************************.99**************963433332556******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle Glyma.12G003200.1.p 98 RDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138 ******9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-60 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.946 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGSSTNGGVP PGFRFHPTDE ELLHYYLKKK LSFQKFDMDV IREVDLNKME PWDLQERCRI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG 120 RAPHGQKTDW IMHEYRLEDG NDPQGSANED GWVVCRVFKK KNLFKIVNEG GSTHNPDQQI 180 NNSSNTNARS YRENHYLLHQ QQNPRNSSGL ELDKPELALH YPHLQNPPYS LFQSQPLLQI 240 QKPMVYDYSY TSDTPIMAKQ LMTNPRDCES GSDGLRYQVS ESGMEVGSCE PNQEMGTGRG 300 EGINEWGVLD RLVTSHLGNE DSSKGVRFEE ANPPSVHQIN QLSLRGEMDF WAYGKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
4dul_A | 7e-53 | 5 | 162 | 13 | 167 | NAC domain-containing protein 19 |
4dul_B | 7e-53 | 5 | 162 | 13 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G003200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-137 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540565.1 | 0.0 | protein BEARSKIN2 | ||||
Refseq | XP_028193925.1 | 0.0 | protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 1e-151 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0B2RJF1 | 0.0 | A0A0B2RJF1_GLYSO; Protein BEARSKIN1 | ||||
TrEMBL | I1LNQ4 | 0.0 | I1LNQ4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G00540.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8752 | 33 | 43 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-145 | NAC domain containing protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G003200.1.p |
Entrez Gene | 100804181 |
Publications ? help Back to Top | |||
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