PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G251900.1.p
Common NameGLYMA_11G251900, LOC100787909
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 911aa    MW: 102395 Da    PI: 5.5799
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G251900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.11.4e-52131283117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e k+rwlk+ e + iL n+++ ++t++++++p  gsl+L+nr+++r frkDG++w+kkkdgktv E+he+LKvg+ve+l+cyYah+een
  Glyma.11G251900.1.p  13 QEaKRRWLKPVEALYILRNHDQCKFTHQPPHQPAGGSLFLFNRRIMRSFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEEN 102
                          56699************************************************************************************* PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          +tfqrr+yw+Le e+++ivlvhy+e+
  Glyma.11G251900.1.p 103 RTFQRRSYWMLEPEYDHIVLVHYRET 128
                          ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.2548134IPR005559CG-1 DNA-binding domain
SMARTSM010764.7E-6611129IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4614127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.3E-6337424IPR013783Immunoglobulin-like fold
PfamPF018332.8E-6338409IPR002909IPT domain
SuperFamilySSF812966.07E-16338422IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.205.1E-15531626IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.743532624IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-15535626IPR020683Ankyrin repeat-containing domain
PfamPF127966.7E-8549626IPR020683Ankyrin repeat-containing domain
CDDcd002048.61E-13552624No hitNo description
SMARTSM002480.0038565594IPR002110Ankyrin repeat
PROSITE profilePS5008811.06565597IPR002110Ankyrin repeat
SMARTSM002483000604633IPR002110Ankyrin repeat
SMARTSM0001568682704IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638683710IPR000048IQ motif, EF-hand binding site
SMARTSM000159.3E-4764786IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249765789IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4767786IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MAGLEYSIDD LFQEAKRRWL KPVEALYILR NHDQCKFTHQ PPHQPAGGSL FLFNRRIMRS  60
FRKDGHNWRK KKDGKTVGEA HERLKVGNVE ILNCYYAHGE ENRTFQRRSY WMLEPEYDHI  120
VLVHYRETSE GKSNSEHVTQ LPSEVTFEAQ ALRQLEEQLS LNDDGFNEIA LDLVSGQDQR  180
VVYKQDKSAA LSGPNDLGQP CDGYNGRQDD SGTYYHDFLD DCPGGNEKTI YWTKVLESCK  240
PLSVTKLPDQ HAYEAIGNEN TLFSSGRGVI ANLENNQWLN SNSNNIENYG GVKFPPYSLA  300
ETPGANSDYY ETFFDQFQNQ GPLGVDSSLT VVQKQKFTIR AVSPEYCYST ETTKVIIIGS  360
FLCHDSDSTW ACMFGDVEVP AEIIQDGIIC CEAPSNHLGK VNLCITSGNR VPCSEMREFE  420
FRNKTTSCTR CNSLETEGSK SPEDLLLLVR FAEMLLSSST TKDDRIESGS HLSTEQKDDD  480
DSWSHIIDTL LDSTRTPSDA VKWLLEELLK DKLQLWLSNR RDEGTGCSLS KKEQGIIHMV  540
SGLGFEWALN PILSCGVNIN FRDINGWTAL HWAARFGREK MVASLIASGA SAGAVTDPSS  600
QDPTGKTAAS IAASHDHKGL AGYLSEVDLT SHLSSLTLEE SELSRESSEL EAELTVSSVS  660
EENLVASEDQ VSLKASLDAV RNAAQAAARI QAAFRAHSFR KRKERDAAAT VLDGYCIDAG  720
SIDNNISVLS AMSKLSSQSW RDYKAALSIQ KKYRNWKGRI EFLALRQKIV KIQACVRGYQ  780
VRKQYKLILW AVGILDKVVL RWRRKRIGIQ SVRQEMESNE EESDDADFLN VFRKEKVNAA  840
IEKALKRVLS MVHSTGARQQ YRRLLSLYRQ AKIEHGSTSD EAPLSTSEEN ASNMEDDDLC  900
QFLDTFFWPS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.260850.0hypocotyl| leaf| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G251900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591445.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLK7LRY70.0K7LRY7_SOYBN; Uncharacterized protein
STRINGGLYMA11G36930.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]