PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G242200.3.p
Common NameGLYMA_11G242200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 310aa    MW: 35310.2 Da    PI: 4.5074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G242200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1955108356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Glyma.11G242200.3.p  55 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 108
                          56689************************************************9 PP
2HD-ZIP_I/II130.56.5e-4254146193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk +  +L++++e+Lr++
  Glyma.11G242200.3.p  54 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFGTLNQDNEALRKQ 143
                          69**************************************************************************************** PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Glyma.11G242200.3.p 144 IKE 146
                          997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-2035112IPR009057Homeodomain-like
PROSITE profilePS5007117.92950110IPR001356Homeobox domain
SMARTSM003896.1E-1853114IPR001356Homeobox domain
PfamPF000463.5E-1655108IPR001356Homeobox domain
CDDcd000866.65E-1755111No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2057117IPR009057Homeodomain-like
PRINTSPR000318.6E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000318.6E-690106IPR000047Helix-turn-helix motif
PfamPF021838.2E-17110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MLVILIMMMS DLICIGLEEH SPRNSHHMYG REFRSMLDGL DEEGCVEEPG HQSEKKRRLS  60
VEQVKALEKN FEVENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYGVLK  120
ANYDALKLNF GTLNQDNEAL RKQIKELKSR LLQEENTAGS GVSVKEEEIT TMPADSEEKT  180
MEQSKSDPPS ETSNINPSSE SSEEDHLNYE CFNNNSDDCV VGGSAAASLL QVDFMKDGSS  240
DSDGSSAILN EDTMYLPSSM NCFQFQKPYH HAQYVKTEEH NFLSADEACN FFSDEQAPTL  300
QWYCPEQWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.31540.0cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G242200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352150.0AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538603.10.0homeobox-leucine zipper protein ATHB-6
RefseqXP_028196075.10.0homeobox-leucine zipper protein ATHB-6-like
RefseqXP_028196076.10.0homeobox-leucine zipper protein ATHB-6-like
TrEMBLI1LNH90.0I1LNH9_SOYBN; Uncharacterized protein
STRINGGLYMA11G37920.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-66homeobox protein 6