PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G240600.1.p | ||||||||
Common Name | GLYMA_11G240600, LOC100809135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 365aa MW: 40633.6 Da PI: 6.0781 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.1 | 3.5e-06 | 161 | 182 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C k F+r snL+ H+r H Glyma.11G240600.1.p 161 FCEICAKGFRRDSNLRMHMRAH 182 6*******************99 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 277 | 293 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg++Fsrk+ L Hi Glyma.11G240600.1.p 277 TCGTTFSRKDKLFGHIA 293 6**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.53E-6 | 157 | 184 | No hit | No description |
SMART | SM00355 | 0.014 | 160 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.302 | 160 | 187 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 161 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 162 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 60 | 207 | 240 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 54 | 245 | 267 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSNSNSNPTR ILHSQSQDPN TTTADPHVLL QNLSLVRTRM DSLQHFLSQS INTNTPLAVD 60 QIAMVSSQIV SSIHQLIVNG SALVSYSQNS TAASGAPDPP LYPKKPEPEP SVADKAKQIL 120 DSKFGPLEDD DDDDGGAEDF DDGSGIVELD AIEILAEHMH FCEICAKGFR RDSNLRMHMR 180 AHGEQFKTVE ALAKPSETTA QRRATRFSCP FEGCNRNKLH RRFRPLKSVI CVKNHFKRSH 240 CPKMYTCERC RKKHFSVLSD LRSHAKHCGG EARWKCTCGT TFSRKDKLFG HIALFDGHAP 300 ALACDEEGKG KQVVEDDEDP MLMNESEFES DNCLLNQELP EGFFDDFGSI DDYCLKEVLG 360 FPSN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4518 | 0.0 | cotyledon| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G240600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235215 | 0.0 | AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537566.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | K7LS56 | 0.0 | K7LS56_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G38080.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 3e-74 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G240600.1.p |
Entrez Gene | 100809135 |