PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G239200.1.p | ||||||||
Common Name | GLYMA_11G239200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35517.7 Da PI: 7.4621 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 137 | 187 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ kl+ge Glyma.11G239200.1.p 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 187 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.81E-36 | 136 | 196 | No hit | No description |
SMART | SM00380 | 2.1E-40 | 137 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-23 | 137 | 195 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-33 | 137 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.617 | 137 | 194 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-14 | 138 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTTFMDMYNT TSSIMTPDFL DQCSDQELMK ALEPFMKSDS SSTTSSSITT YPSFSSFSSS 60 PNLSSTTWST QFCSSSYHQK GPTPTQASSF KLNQLTPSQI FQIQAQIQVP RAQFLSPKPI 120 TMKHVRASCS NSKATKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EEAALAYDNA 180 AFKLRGENAR LNFPHLRHHG ARVYGEFGNY KPLPSAVDAK LQAICQSLGT KLQKLKTDQN 240 PVVDAKVKKT SEFEDFKIEN QTSSSSALSD EYSSSSSSPE SDITFLDFSD SCETTCNLGL 300 DLEKYPSVEI DWAALSES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 136 | 194 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7040 | 0.0 | cotyledon| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G239200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093306 | 0.0 | BT093306.1 Soybean clone JCVI-FLGm-24E1 unknown mRNA. | |||
GenBank | JQ924191 | 0.0 | JQ924191.1 Glycine max clone Gm11lower_Williams_82 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304409.2 | 0.0 | ethylene-responsive transcription factor ERF060-like | ||||
Swissprot | Q8H1E4 | 2e-72 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0R0HLE4 | 0.0 | A0A0R0HLE4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G02170.1 | 1e-160 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-56 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G239200.1.p |
Publications ? help Back to Top | |||
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