PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G239000.1.p
Common NameGLYMA_11G239000, LOC106795211
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family EIL
Protein Properties Length: 399aa    MW: 45263.1 Da    PI: 4.8444
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G239000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3348.21.7e-106222671257
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          e lkkrmwkd++ll++lke++++    +e++++ak     +e++rrkkmsraQD++LkYM+k+me cnaqGfvYgiipekgkpv++ sds
  Glyma.11G239000.1.p  22 EQLKKRMWKDRVLLQKLKEKREK----QEPDVEAK-----QEASRRKKMSRAQDSVLKYMVKIMEDCNAQGFVYGIIPEKGKPVSSYSDS 102
                          679************99999987....78988887.....7************************************************* PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHH...HHHH.HHSSSSSS-TTS--TTT--HHHH---S CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlg...SLLs.almqhcdppqrrfplekgvepPWWPtG 176
                          Lr+WWk++++fd+n+p+aisky     ++  e++l  + ss+ h l++lqD+t+    SL s a mqhc ppqrrfple+g++pPWWP+G
  Glyma.11G239000.1.p 103 LREWWKDQIRFDQNAPVAISKY-----LPVLENDL--DISSYIHLLQDLQDSTCTrlsSLCShARMQHCAPPQRRFPLERGLSPPWWPSG 185
                          **********************.....33444566..56***************999899875788************************ PP

                          --HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
                 EIN3 177 kelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                          +e wwg++g l++ +g+ppy+kphdlkkawkvsvL+avikh+sp+++++r+l+ qsk lqdkm+ak+s+++++v+ qee+ +
  Glyma.11G239000.1.p 186 EEVWWGQQGlLAQVHGPPPYRKPHDLKKAWKVSVLAAVIKHISPDFDKLRRLVTQSKTLQDKMTAKDSATWSKVMIQEEAWL 267
                          *********8888888**************************************************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.4E-10522264No hitNo description
Gene3DG3DSA:1.10.3180.104.6E-59135266IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.57E-51138266IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAVINKEIID EPYEQEECID YEQLKKRMWK DRVLLQKLKE KREKQEPDVE AKQEASRRKK  60
MSRAQDSVLK YMVKIMEDCN AQGFVYGIIP EKGKPVSSYS DSLREWWKDQ IRFDQNAPVA  120
ISKYLPVLEN DLDISSYIHL LQDLQDSTCT RLSSLCSHAR MQHCAPPQRR FPLERGLSPP  180
WWPSGEEVWW GQQGLLAQVH GPPPYRKPHD LKKAWKVSVL AAVIKHISPD FDKLRRLVTQ  240
SKTLQDKMTA KDSATWSKVM IQEEAWLGLT DKCLKISASN QEEEDDIAQG LKRKGAFGFG  300
DAALDTMYAC QNVEFPQSED DWMNVAVQND VSLGEDAGGS GTLEDDPCYW LNSVENLELQ  360
AALELLVRDN VDFAPNIPQG QEDAASASDL GTHPPQQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-491362651125Protein ETHYLENE INSENSITIVE 3
4zds_B4e-491362651125Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G239000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9241910.0JQ924191.1 Glycine max clone Gm11lower_Williams_82 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619736.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-110EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLI7B2Z40.0I7B2Z4_SOYBN; Putative ethylene insensitive 3-like 4 protein
STRINGGLYMA18G02190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-108EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lee WK, et al.
    Dynamic genetic features of chromosomes revealed by comparison of soybean genetic and sequence-based physical maps.
    Theor. Appl. Genet., 2013. 126(4): p. 1103-19
    [PMID:23306355]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]