PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G236300.10.p
Common NameGLYMA_11G236300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 365aa    MW: 41178.8 Da    PI: 6.7304
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G236300.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-1176109336
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                            +k +rr+++NReAAr+sR+RKka++++Le    
  Glyma.11G236300.10.p  76 TDKIQRRLAQNREAARKSRLRKKAYVQQLESSRL 109
                           7899*************************97544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-869120No hitNo description
SMARTSM003389.2E-774134IPR004827Basic-leucine zipper domain
PfamPF001709.7E-876112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09476120IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-778120No hitNo description
CDDcd147084.65E-2278130No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141448.7E-32166240IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNSASPQFVS PRSMSVYDPI HQISMWGEGF KSNGNLSAAM PLIDEADMKF DSQSEDASHG  60
ILGEPNKYDQ EASKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEQELER  120
ARQQGMYIGG GLDSNHLGFA GSVNSVAGIT TFEMEYGHWV NEQNRQITEL RNALNAHIGD  180
VELRILVDGM MSHYAEMFRM KSAAAKADVF YVMSGMWKTT AERFFLWIGG FHPSELLKVL  240
GPLIEPLTEQ QRLNIYNLGQ SCQQAEDALS QGMDKLRQTL ADSVAAGQFM EGTYIPQMTS  300
AMEKLEDLVS FVKQADHLRQ ETLEQMSRIL TIRQAARCLL ALGEYFQRLR ALSSLWSNRP  360
REPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.460.0hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G236300.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYSTGA0.0L28005.1 Glycine max TGACG-motif binding protein (STGA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590369.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_006590370.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_006590371.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_006590372.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_006590374.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_006590375.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_006590376.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_014619016.10.0bZIP transcription factor bZIP52 isoform X1
RefseqXP_028195712.10.0transcription factor TGA4-like isoform X1
RefseqXP_028195713.10.0transcription factor TGA4-like isoform X1
RefseqXP_028195714.10.0transcription factor TGA4-like isoform X1
RefseqXP_028195715.10.0transcription factor TGA4-like isoform X1
RefseqXP_028195716.10.0transcription factor TGA4-like isoform X1
RefseqXP_028195717.10.0transcription factor TGA4-like isoform X1
RefseqXP_028195718.10.0transcription factor TGA4-like isoform X1
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A445HHA00.0A0A445HHA0_GLYSO; Transcription factor TGA4 isoform B
TrEMBLK7LRT70.0K7LRT7_SOYBN; Uncharacterized protein
STRINGGLYMA11G36010.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-175TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  3. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]