PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G231500.1.p | ||||||||
Common Name | GLYMA_11G231500, LOC100305534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 21064.1 Da PI: 7.7369 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.3 | 3e-39 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l Glyma.11G231500.1.p 16 SCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 105 6***************************************************************************************** PP DUF260 91 kaelallke 99 +++l+ +k+ Glyma.11G231500.1.p 106 QHDLVIAKD 114 ****99886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.256 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-38 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MLVRGMKGYE PRSSSSCAAC KLLKRRCIPN CIFAPYFRSD ECKKFAKVHK VFGASNVSKI 60 LIEVPEEQRE DTVNSLAYEA EARLRDPVYG CIGAIALLQR KMVELQHDLV IAKDRLARCH 120 AAATAAATTT TTTSIPSPDI LHANVSLPPF PDFYTSSSDF NDIFCHSSSS QLLSRHETVD 180 DFNQIPYIF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-44 | 11 | 118 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-44 | 11 | 118 | 6 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.51826 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G231500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT089179 | 0.0 | BT089179.1 Soybean clone JCVI-FLGm-1E18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236716.1 | 1e-139 | uncharacterized protein LOC100305534 | ||||
Swissprot | Q9SRL8 | 5e-62 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | C6SVI6 | 1e-138 | C6SVI6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G35500.1 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11090.1 | 7e-64 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G231500.1.p |
Entrez Gene | 100305534 |
Publications ? help Back to Top | |||
---|---|---|---|
|