PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G231300.1.p | ||||||||
Common Name | GLYMA_11G231300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 31174.8 Da PI: 9.5763 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.5e-12 | 92 | 138 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h ++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++ +k+L Glyma.11G231300.1.p 92 KSHRQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 138 79*************************8.....7***********9999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.875 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-13 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.16E-9 | 92 | 141 | No hit | No description |
SuperFamily | SSF47459 | 6.02E-12 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-10 | 92 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-10 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00572 | 187 | 222 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MMGDKRLRNH GRNFRMVSIV TMENYYDSGW HMGTSNWAQC SDHSSSSSFA VPTQQILPHH 60 VTDAASLQFG EFHSWSLPIE GAAEERAISA SKSHRQAEKR RRDRINAQLA TLRKLIPKSD 120 KMDKAALLGS VIDQVKDLKR KAMDVSRAFT VPTEIDEVSI HHDHVLQDES CTEKVNKLKD 180 NIVIKASVCC DDRPELFPEL IQVLKGLRLT AVKADIASVG GRIKSILVLC SKDSESVCLA 240 TLKQSLKSAI TKIASSSSMA SSCPSRSKRQ RFFLPSHCLQ * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.36487 | 0.0 | hypocotyl| meristem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G231300.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT089476 | 0.0 | BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028196213.1 | 0.0 | transcription factor bHLH51-like | ||||
Swissprot | Q9XEF0 | 1e-47 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | A0A445HHF2 | 0.0 | A0A445HHF2_GLYSO; Transcription factor bHLH51 | ||||
TrEMBL | I1LMT1 | 0.0 | I1LMT1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G35480.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-41 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G231300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|