PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G214300.1.p | ||||||||
Common Name | GLYMA_11G214300, LOC100815016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 27671.7 Da PI: 6.3691 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Glyma.11G214300.1.p 107 FSCNYCKRKFFSSQALGGHQNAH 129 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.9E-6 | 104 | 134 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MKQHFDLEVV ASEEYESEVS SLVTSNISIQ ETYAGPCSDN LTKFFNVTNP IELHLHSDSI 60 SLDLTLKFNN NDLVVRNSAG ISFSSTSESS INDPPSQTNP ANNPRVFSCN YCKRKFFSSQ 120 ALGGHQNAHK RERTIAKRAM RMGIFSERYE SLASLPFNGS FRSLGIKAHS SLHHGFVPTT 180 KSSARFEQGY VGLPIFLEED EEELLWQGSY HQVPSEGGHT HQNFSLSGSS ILSFVGENAN 240 HPPELTLKL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G214300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-177 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006591323.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_006591324.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_014619692.1 | 0.0 | zinc finger protein 4 | ||||
TrEMBL | I1LMA0 | 0.0 | I1LMA0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G33420.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 6e-39 | zinc finger protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G214300.1.p |
Entrez Gene | 100815016 |