PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G210800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 401aa MW: 43763.1 Da PI: 8.6886 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.1e-18 | 57 | 117 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Glyma.11G210800.2.p 57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112.1 | 2.9e-36 | 56 | 118 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k Glyma.11G210800.2.p 56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 42 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-12 | 53 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.511 | 53 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-9 | 55 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-8 | 56 | 118 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 57 | 117 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNPH HQWQHDINSS LISTSCHRSP YSSGGGGGCE ERSPEPKPRW 60 NPKPEQIRIL EAIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR 120 HLQNSSSKNL NHHHHLVDQN HHTPTSLPQT ATTAPSSSSS SSSEKSSPKE LIIPTTKVFS 180 IGFSDVMPNS PTASVNQTYF QTRINESIML PSPPPPVEAF FFPVQQQHHG VTSSSQGFCF 240 SELSNVVHQH NSVGPCTSLL LSEIVGHGVA SASASKKDKS QVKIMHQPSL LNFCVTTPTT 300 TAPSTTTTVV VPPITTTSST TVPSPLMHQL QGIGDPGGAA RSMVFINDVA FEVALGPFNV 360 REAFGDDAVL IHASTGQPVL TNQWGLTLHS LQHGACYYLI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G210800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095716 | 0.0 | BT095716.1 Soybean clone JCVI-FLGm-25E14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594207.1 | 0.0 | WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A445HGE8 | 0.0 | A0A445HGE8_GLYSO; WUSCHEL-related homeobox 9 isoform A | ||||
STRING | GLYMA13G21860.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-62 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G210800.2.p |