PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G208800.2.p

Common Name

GLYMA_11G208800, LOC100817197

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRF

Protein Properties

Length: 332aa MW: 36409.5 Da PI: 7.1531

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G208800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9.4e-25	128	172	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++g+k+C+rH+hrgr+rsrk++e+ Glyma.11G208800.2.p 128 DPEPGRCRRTDGKKWRCSKDAVAGQKYCDRHMHRGRNRSRKPVEQ 172 79****************************************997 PP
2	QLQ	55.8	1.4e-19	74	109	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q+l+++y++a++PvPpeLl++i+k Glyma.11G208800.2.p 74 CFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKK 109 6*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.3E-11	73	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.94	74	109	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.6E-14	75	107	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.386	128	172	IPR014977	WRC domain
Pfam	PF08879	1.3E-21	129	171	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDLQLKQWSN RHESEQEHYS PNMPKFLPQH HPPPSPSALP LFVPEQPNTK VCTLSAFSDS 60 TLPSAPRFSR MESCFSFAQW QELELQALIF RYMLAGAPVP PELLLPIKKS FLQLYNPPWY 120 YWGRAALDPE PGRCRRTDGK KWRCSKDAVA GQKYCDRHMH RGRNRSRKPV EQRDGSLSAI 180 ASVSSSPSSS FNLLHLSESS SGAKSDNKSF FENHDHVDGD GNSAKSDGHV LRHFFDDWPR 240 TLQEPDNGES NGCQNNNSGT CLSMSTPGIT SSDVSLKLST GHGEDACHAA SMGGPLAEAL 300 RSSTTSSTSS PTSVLLQLPP SSASEASFIS T*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G208800.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006594200.1	0.0	growth-regulating factor 3 isoform X2
Swissprot	Q8L8A7	8e-76	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A0R0HXE6	0.0	A0A0R0HXE6_SOYBN; Uncharacterized protein
STRING	GLYMA13G21625.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	8e-66	growth-regulating factor 4

Link Out ? help Back to Top
Phytozome	Glyma.11G208800.2.p
Entrez Gene	100817197

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]