PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G188200.1.p | ||||||||
Common Name | GLYMA_11G188200, LOC100793751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25969.1 Da PI: 5.3365 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.9 | 1.8e-16 | 63 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ ++Wv+eIr+p + r+++g++ t+e+Aa+a++ a ++l g Glyma.11G188200.1.p 63 PVYRGVRQRN-GNKWVCEIREPI----KkSRVWVGTYPTPEMAARAHDVAVLALSG 113 68*****999.9*********72....35*********************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.5E-12 | 63 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.758 | 64 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-19 | 64 | 123 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.5E-26 | 64 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 64 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 65 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.74E-27 | 65 | 123 | No hit | No description |
PRINTS | PR00367 | 3.0E-7 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MEFEIINESP ADSTSLSSSS VSPCTPPNPN LLCDSPNPQP NTNTNPSHKR KAGRKKFRET 60 RHPVYRGVRQ RNGNKWVCEI REPIKKSRVW VGTYPTPEMA ARAHDVAVLA LSGTSAKFNF 120 PDSVSLLPLA KSHSAVDIRE AAKAASIEAF IPNTAFSSSH NNSNFGENGN AEDTCLNIGM 180 HDDESETMFF DEEAVYNMPG LLDSMAEGLL ITPPSMKRAM DWDDIGCVID LTLWTN* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G188200.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539179.1 | 1e-177 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 2e-52 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 2e-52 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | K7LQ79 | 1e-175 | K7LQ79_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G19341.1 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25490.1 | 7e-51 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G188200.1.p |
Entrez Gene | 100793751 |
Publications ? help Back to Top | |||
---|---|---|---|
|