PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G183400.1.p
Common NameLOC100781878
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 415aa    MW: 46213 Da    PI: 8.3835
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G183400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.31.7e-3350104155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Glyma.11G183400.1.p  50 KPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 104
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.83747107IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-3148105IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1649105IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-2350105IPR006447Myb domain, plants
PfamPF002491.8E-952103IPR001005SANT/Myb domain
PfamPF143795.0E-21155201IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MYSTHQQHQG KNIHSSSSSS RMPIPSERHM FLQTGNGSGD SGLVLSTDAK PRLKWTPDLH  60
ARFIEAVQQL GGADKATPKT VMKLMGIPGL TLYHLKSHLQ KYRLSKSLHG QSNNATHKIT  120
INSGSATDER LRENNETHVM NNLNLAPQSI NKDLHISEAL QMQIEVQRRL NEQLQVQRLL  180
QLRIEAQGKY LQAVLEKAQE TLGRQNLGVV GLEAAKLQLS ELVSKVSSQC LNSAFSELKE  240
IQGFSPHHQK QTQTNNNQPI NANDCSMDSC LTSCEGSSQK DQQEIQNRGM NLIPFNVHTF  300
MEGPNLNNLP NTDLKWCDPV KKNNTFLTRL SMHAERSPSN LSMSIGLLEG ETTENRSTIV  360
RTESIKPAVA EKVSQDYGLP SNYFAASKLD QTTEDNKDTK TSCKQLDLNG FSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-2049106158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G183400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959460.0BT095946.1 Soybean clone JCVI-FLGm-25M4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619609.10.0myb-related protein 2
SwissprotQ9SQQ91e-122PHL9_ARATH; Myb-related protein 2
TrEMBLA0A368UK900.0A0A368UK90_SOYBN; Uncharacterized protein
STRINGGLYMA11G18990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-107G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]