PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G165800.1.p
Common NameGLYMA_11G165800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 618aa    MW: 72157.7 Da    PI: 8.8908
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G165800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.65.5e-201198189
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                         +fY+ YAk+ GFsvrks+  ++    e+ ++tfvCs+ g+r+ ++++ ++ +++++e+r+gC+a+++v+ +  +++w+vt  + eHnH l
  Glyma.11G165800.1.p 11 QFYCWYAKMSGFSVRKSHIVRN-SFMETLQQTFVCSCTGYRKVTTSD-TRIQKEKKESRCGCEAMFRVHVHFsTDRWYVTCWNFEHNHVL 98
                         6*****************9999.55569***************9999.99*********************99***************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-171199IPR004330FAR1 DNA binding domain
PfamPF105514.8E-33219313IPR018289MULE transposase domain
PROSITE profilePS509669.928484531IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-4506533IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
LDFGDLELAY QFYCWYAKMS GFSVRKSHIV RNSFMETLQQ TFVCSCTGYR KVTTSDTRIQ  60
KEKKESRCGC EAMFRVHVHF STDRWYVTCW NFEHNHVLLD LKLSCLLAGH RKMLASDIMQ  120
VENYRKVGIR PPHMYAAFAN QCGGYEKVGF IRKDIYNEEG RMRRQHSSDA RGALKYLYDL  180
RKKEPMMYVS CTADEESRLQ RLFWSDTESQ LLYQVFGDVL AFDATYKKNK YLCPFVVFSG  240
VNHHNQTIVF AAAIVTDETE ETYVWLLEQL LVAMKGKAPC SIITDGDLAM RNAITRVMPG  300
VSHRLCAWHL LRNALSHVRD KHLLKWLKKL MLGDFEVVEF EEKWKEMVAT FELEDNSWIA  360
ELYERRMKWS TAHLRGRFFA GIRTTSRCEA FHAHVAKYVH SRTNLTDFVE QFQRCLTYFR  420
YRAVVADYSS TYGKEVLQTN LRSLERSGDE LFTKEMFQLF QSYLCRTIKL RVVDCKEMAT  480
FSVFTVVKYC SGSVWCVSHC PSTVEFTCTC MRMQSIGLPC DHILAVLVSL NFMELPSSLV  540
LNRWSKLNLI GNEFMFANVR GGLLWFRGPE PPMKKKKEKL EVIVFSLMFR YQKIQNSYIQ  600
NNCRITNLNY APVSKLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G165800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352100.0AC235210.1 Glycine max strain Williams 82 clone GM_WBb0019I19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591712.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0R0HI930.0A0A0R0HI93_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA11G29330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-82FAR1-related sequence 5