PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G163300.1.p
Common NameGLYMA_11G163300, LOC100127421
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 549aa    MW: 60399 Da    PI: 7.4193
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33219276260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+s  d++++ei+Y+g+Hnh+k
  Glyma.11G163300.1.p 219 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKSL-DGQITEIVYKGTHNHPK 276
                          8****************************************.***************85 PP
2WRKY107.56.6e-34379437159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Glyma.11G163300.1.p 379 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASQDLRAVITTYEGKHNHD 437
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27210277IPR003657WRKY domain
SuperFamilySSF1182903.66E-25217277IPR003657WRKY domain
SMARTSM007749.0E-36218276IPR003657WRKY domain
PfamPF031063.0E-25219275IPR003657WRKY domain
PROSITE profilePS5081123.319219277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37364439IPR003657WRKY domain
SuperFamilySSF1182902.22E-29371439IPR003657WRKY domain
PROSITE profilePS5081137.792374439IPR003657WRKY domain
SMARTSM007741.6E-39379438IPR003657WRKY domain
PfamPF031065.2E-26380437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MTTSFSDLLS SPTSNHHNLG GFERPHHESY SSDQTGSSGG VPKFKSTPPP SLPLSHNHPQ  60
TPIFSPSSYF NIPHGLSLAE LLDSPVLLNS SNVLPSPTAG SFGGQGFNWK SSYGESQQHI  120
KEEDKSFSSF SFPTQTHPPL PSSTGFQSST GIVQTGWSFP ETAKQDGFAS RISMSMVKTE  180
TTSAMQSLTP ENNNHRNGFQ SDHKNYQPQQ VQTLSRRSDD GYNWRKYGQK QVKGSENPRS  240
YYKCTYPNCP TKKKVEKSLD GQITEIVYKG THNHPKPQAA KRNSLSASSS LAIPHSNHGS  300
NELPHHQMDS VATPENSSIS MDDDDFDHTK SGGDEFDNDE PDAKRWRIEG ENEGISAVGS  360
RTVREPRVVV QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTFPGC PVRKHVERAS  420
QDLRAVITTY EGKHNHDVPA ARGSGNNSIS RSLPIITNTT NNTTSVATSI STNNNSLQSL  480
RPPAPPERPS LSHFNPNMQH SSGSFGFSGF GNPLMGSYMN QQSYNNVFTT TRDKEEPGDD  540
SFLDSLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37211440878Probable WRKY transcription factor 4
2lex_A2e-37211440878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217520.0flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G163300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195630.0EU019563.1 Glycine max WRKY19 (WRKY19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348203.10.0WRKY transcription factor 19
RefseqXP_028190868.10.0WRKY transcription factor WRKY24-like
SwissprotQ6IEQ71e-132WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0B2QN150.0A0A0B2QN15_GLYSO; Putative WRKY transcription factor 33
TrEMBLI1LLT60.0I1LLT6_SOYBN; Uncharacterized protein
STRINGGLYMA11G29720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-104WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]