PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G155400.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 332aa    MW: 35606.7 Da    PI: 8.5013
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G155400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702175.52.5e-541372857153
               DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskk.qsalsstklss 93 
                           CqdCGn+akkdC ++RCRtCCk rg+dC+thvkstW+p+ +rrer  + a+    +  +    ++++    +++s++ +++  s  +ss
  Glyma.11G155400.1.p 137 VCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASGGGGKRPRGivGSSQKATVTSHSSNSnATTPRSLATSS 226
                          7*********************************************88777765444333333333333333333333033444444444 PP

               DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                            ++  + ++sl  +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++
  Glyma.11G155400.1.p 227 F-HQDGSLKQSLLGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 285
                          4.44455566799*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016238.5E-26137179IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.6E-52137285IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016243.4E-22239284IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSMLGLRDLV LIAPTPSSLN HHQGQPFSEN HTNTHTPNNI PLPSSAASLS VGFGIFPLLT  60
ATPCVPQSHH HHHNNEVQEL GGGANSNTTT NYWNLKMCQQ EVNNPPKKGV INVADHDDEK  120
GIMENEENGV YGPNFRVCQD CGNRAKKDCI FRRCRTCCKG RGYDCNTHVK STWIPSVRRR  180
EREITVASGG GGKRPRGIVG SSQKATVTSH SSNSNATTPR SLATSSFHQD GSLKQSLLGH  240
VRAPAVFKCH RVSAIGNGED EFAYLATVHI SGHVFKGFLY DHGVDGKTAN AVVPCVSELQ  300
VGNNCSGKNR ECSSAIAIGV TNNNAYPASA T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G155400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358970.0AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539250.10.0protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_006591197.10.0protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_014619562.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLK7LQM70.0K7LQM7_SOYBN; Uncharacterized protein
STRINGGLYMA11G21700.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-50Lateral root primordium (LRP) protein-related