PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G150200.1.p
Common NameGLYMA_11G150200, LOC100779726
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 443aa    MW: 50301.2 Da    PI: 6.5151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G150200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.21.3e-116254384373
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lLl+cA++v+sg+ ++a+  L+ +s+++spdg+++qR+++yf eAL+ r+ +  +++yk+l+p +ts   sse + ++k+f++++P+lkf
  Glyma.11G150200.1.p  25 LLLDCAKCVASGSIKNADIGLEYISQISSPDGSAVQRMVTYFSEALSYRIIKRLPGVYKSLNPPKTS--LSSEDILVQKYFYDLCPFLKF 112
                          79***********************************************************999887..69******************* PP

                 GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                          s+l++NqaI+ea+e e+ vHiiD+   +++QW+ Ll ++ +R++gpp+l+iTg+++    +ke l +++  L+  A +l+ p++f + v 
  Glyma.11G150200.1.p 113 SYLITNQAIVEAMEFEKVVHIIDLHCCEPAQWIDLLLTFKNRQGGPPHLKITGIHE----KKEVLDQMNFHLTTEAGKLDFPLQFYP-VI 197
                          ********************************************************....9**************************.79 PP

                 GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrll........................................................des 217
                          ++led+++e+L vk g+ala+++vlqlh+ll                                                          s
  Glyma.11G150200.1.p 198 SKLEDVDFEKLPVKIGDALAISSVLQLHSLLatdddmagrispaaaatmnlqravhmgqrtfaewlerdminayilspdsalsplslGAS 287
                          99****************************************************************************999776444444 PP

                 GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                           +       +L+++++l+Pk+vv++eqe+++n+++++er+ +al++ysalfd+le+++ r+s er+k+E +llg++i+n++aceg +r+e
  Glyma.11G150200.1.p 288 PK----MGIFLNAMQKLQPKLVVITEQESNLNGSNLMERVDRALYFYSALFDCLESTVLRTSVERQKLESMLLGEQIKNIIACEGVDRKE 373
                          44....566********************************************************************************* PP

                 GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          rhe+lekW +rle+aGF +vpls++   +ak ll++++++ y+  ee+++l+ +W+d p++svSaW
  Glyma.11G150200.1.p 374 RHEKLEKWIRRLEMAGFVKVPLSYNGRIEAKNLLQRYSNK-YKFREENDCLLVCWSDTPMFSVSAW 438
                          **************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.8991420IPR005202Transcription factor GRAS
PfamPF035144.4E-11425438IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDSGSPYQWL RELRWESQGL NPMILLLDCA KCVASGSIKN ADIGLEYISQ ISSPDGSAVQ  60
RMVTYFSEAL SYRIIKRLPG VYKSLNPPKT SLSSEDILVQ KYFYDLCPFL KFSYLITNQA  120
IVEAMEFEKV VHIIDLHCCE PAQWIDLLLT FKNRQGGPPH LKITGIHEKK EVLDQMNFHL  180
TTEAGKLDFP LQFYPVISKL EDVDFEKLPV KIGDALAISS VLQLHSLLAT DDDMAGRISP  240
AAAATMNLQR AVHMGQRTFA EWLERDMINA YILSPDSALS PLSLGASPKM GIFLNAMQKL  300
QPKLVVITEQ ESNLNGSNLM ERVDRALYFY SALFDCLEST VLRTSVERQK LESMLLGEQI  360
KNIIACEGVD RKERHEKLEK WIRRLEMAGF VKVPLSYNGR IEAKNLLQRY SNKYKFREEN  420
DCLLVCWSDT PMFSVSAWSF SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5554391378Protein SCARECROW
5b3h_D2e-5554391378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.446620.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G150200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539220.10.0scarecrow-like protein 3
RefseqXP_028189477.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-151SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445I3390.0A0A445I339_GLYSO; Scarecrow-like protein 3
TrEMBLI1LL900.0I1LL90_SOYBN; Uncharacterized protein
STRINGGLYMA11G20980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-151scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]