PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G145500.1.p | ||||||||
Common Name | GLYMA_11G145500, LOC100810558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 698aa MW: 76556 Da PI: 7.8202 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.1 | 1.9e-24 | 109 | 210 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF Glyma.11G145500.1.p 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldctAEPPVQ--TVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL 196 89****************************997556555..8************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++ l+v+++r+ Glyma.11G145500.1.p 197 --RAENGDLCVGIRRA 210 ..4488999****997 PP | |||||||
2 | Auxin_resp | 111.2 | 1.1e-36 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++++FevvY+Prast+eF+vk+++v +a++++++ GmRfkmafeted+ ++++ +Gt+++v+ +dp+ WpnS+Wr+L+ Glyma.11G145500.1.p 272 AVTLAASNKAFEVVYYPRASTPEFCVKASSVGAAMRIQWCSGMRFKMAFETEDATRISWfMGTIASVQVVDPICWPNSPWRLLQ 355 6788999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-37 | 102 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-29 | 102 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-22 | 108 | 209 | No hit | No description |
Pfam | PF02362 | 1.3E-22 | 109 | 210 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.324 | 109 | 211 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-23 | 109 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-31 | 272 | 355 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.697 | 585 | 665 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MKEGEKVLDP QLWHACAGGM VQMPQVHSKV FYFPQGHAEH AHTTIDLRVP PFILCNVEAV 60 KFMADPETDQ VFAKLSLVPL RNSELGPDSD SAAGDDAAEP SSCEKPASFA KTLTQSDANN 120 GGGFSVPRYC AETIFPRLDC TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS 180 FVNQKKLVAG DSVVFLRAEN GDLCVGIRRA KKGIDEGSGL ASSSVWSSAS GSGIGPFSFF 240 LKEENKMLRN GCGVGGNLSG RVKVRAEDVV EAVTLAASNK AFEVVYYPRA STPEFCVKAS 300 SVGAAMRIQW CSGMRFKMAF ETEDATRISW FMGTIASVQV VDPICWPNSP WRLLQVTWDE 360 PDLLQNVKRV SPWLVELVSN IPLINFTPFS PPRKKLRPQH PDFPLDVQFP IPMLSGNQHG 420 PNSPLCGFSD NAPAGIQGAR HAQFGKSLSD LHLNNNKLQL GMLPTNIHQL GGVYTGISSG 480 NMMTKHDKSK ESLSCFLTMG KSSKSLEKSD DVKKHQFLLF GQPILTEQQI SSCSRDVLSR 540 GKRSLGDEKD KAKCVLDDSQ STLSQQFSPG KASSAEFFWQ LGLDTGHCKV FLESEDVGRT 600 LDLSQFGSYE ELYRRLGNMF GIERSEILNH VLYYDAAGAV KQTGEEPFSD FMKTAKRLTI 660 LTDSGSKNIK RAFITGTRNG EHGLDPSNKT GPLSIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-76 | 7 | 376 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.49159 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G145500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538160.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | I1LL50 | 0.0 | I1LL50_SOYBN; Auxin response factor | ||||
STRING | GLYMA11G20490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G145500.1.p |
Entrez Gene | 100810558 |
Publications ? help Back to Top | |||
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