PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G138600.1.p | ||||||||
Common Name | GLYMA_11G138600, LOC100796903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 743aa MW: 83852.9 Da PI: 5.5571 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 371.7 | 9.5e-114 | 369 | 739 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+avss+d a++lL++++++asp gd +qRla++f+ AL+arl+++++++y al+ ++ts ++ ++a++++ ++P+ Glyma.11G138600.1.p 369 LRTLLILCAQAVSSDDRMSANELLKQIKQHASPLGDGTQRLAQCFASALEARLVGTGTQIYTALSHKRTS---AADMVKAYQMYISACPF 455 5789************************************************************999999...99*************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s + aN++Il +++ e++HiiDf+i +G+QWpaL+ L+++p+gpp+lRiTg++ p++g +e+++etg rL++++++++vpfef Glyma.11G138600.1.p 456 KKLSMIFANHTILHLAKEVETLHIIDFGIRYGFQWPALIYRLSKQPGGPPKLRITGIELPQPGfrPAERVQETGLRLTRYCDRFNVPFEF 545 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+ +a+++e++++e+L++k++E l+ n +++ ++llde+v ++s+rd+vLkl+++ +P ++ +++ + ++n++ F++rf eal +ys+lf Glyma.11G138600.1.p 546 NA-IAQKWETIKIEDLKIKENELLVANAMFRFQNLLDETVVVNSPRDAVLKLIRKANPAIFLHANVNGSYNAPFFVTRFREALFHYSTLF 634 **.7************************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d l+++++ e+ r + Ere++gr+++n+vaceg er+er et+++W+ r ++aGFk++pl+++ ++ ++ l+ + +++ e+++ + Glyma.11G138600.1.p 635 DVLDTNVACEDPMRLMFEREFFGRQVMNIVACEGCERVERPETYKQWQVRNMRAGFKQLPLDKHLINKLRCKLKDAYHSDFMLLEDDNYM 724 *****************************************************************************777********** PP GRAS 359 vlgWkdrpLvsvSaW 373 ++gWk+r +++ S+W Glyma.11G138600.1.p 725 LQGWKGRVVYASSCW 739 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.58 | 343 | 720 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-111 | 369 | 739 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MDPHLKSNFI NGVKPSQVPN TVDVEDHSFD PVNGMMKPFD FGFMDNRFLI SPDPNAAQNP 60 FSSSTDEDYP LDEIDFSATV LRYINQMLME EDLEAKPCMF HDTLALQAAE KSFYEVIGET 120 YHSSSIQNYH NMDSPDESSF SGATTSTSNS FESQWNNVDL ADYKPSILQT TFPADFVFQA 180 SSIQSSMNTT SNFAVTNSQF LASSVAGFLD PGSTNLFSKS ESVLQFERGV EEANKFLPKW 240 NPLVFDLENP SFRMVPPQQV KIKAETERDE ISAESRGRKN HEREDEEADL QDGRSNKQSA 300 VYIDDSEISE LLDKVLLGTG CRNEQAPSCI GHADLPNGPS LGKLEETNKS GGGKSHVKKQ 360 GSKKEIVDLR TLLILCAQAV SSDDRMSANE LLKQIKQHAS PLGDGTQRLA QCFASALEAR 420 LVGTGTQIYT ALSHKRTSAA DMVKAYQMYI SACPFKKLSM IFANHTILHL AKEVETLHII 480 DFGIRYGFQW PALIYRLSKQ PGGPPKLRIT GIELPQPGFR PAERVQETGL RLTRYCDRFN 540 VPFEFNAIAQ KWETIKIEDL KIKENELLVA NAMFRFQNLL DETVVVNSPR DAVLKLIRKA 600 NPAIFLHANV NGSYNAPFFV TRFREALFHY STLFDVLDTN VACEDPMRLM FEREFFGRQV 660 MNIVACEGCE RVERPETYKQ WQVRNMRAGF KQLPLDKHLI NKLRCKLKDA YHSDFMLLED 720 DNYMLQGWKG RVVYASSCWV PA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-53 | 352 | 741 | 1 | 379 | Protein SCARECROW |
5b3h_D | 7e-53 | 352 | 741 | 1 | 379 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G138600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539083.1 | 0.0 | scarecrow-like protein 14 isoform X1 | ||||
Refseq | XP_028189930.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A445I184 | 0.0 | A0A445I184_GLYSO; Scarecrow-like protein 14 | ||||
TrEMBL | K7LPN1 | 0.0 | K7LPN1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G14750.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G138600.1.p |
Entrez Gene | 100796903 |
Publications ? help Back to Top | |||
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