PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G138400.2.p
Common NameGLYMA_11G138400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 566aa    MW: 64762.9 Da    PI: 9.273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G138400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.82.5e-1181885621373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl c + v ++d++ a++lL+++++++sp gd+ qRla+yft++L+arl++ +++     +  ++++ +++e l+a+++f   sP+
  Glyma.11G138400.2.p 188 LRNLLLMCSQSVYANDNRTANELLKQIRQHSSPVGDASQRLAHYFTNGLEARLVGDGTSAQGMYTFLSSKNITVAEFLKAYQVFTSSSPF 277
                          6899**************************************************9666666555666666566***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           kf h+ aN++I++a++++e+vHiiDf+i +G+QWp L++ +++R++gpp+lRiTg++ p++g   +e++eetg+rLa+++++ +vpfe+
  Glyma.11G138400.2.p 278 KKFIHFFANKMIMKAAAKAETVHIIDFGILYGFQWPILIKFFSNREGGPPKLRITGIEFPQPGfrPAERIEETGHRLANYCKRYNVPFEY 367
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n++++k++e++++e+L+++++E +aVn++l+ ++lldes +++s+r+ vL+l+++++P++++ +  + ++n++ F++rf eal +ysa++
  Glyma.11G138400.2.p 368 NAIASKNWENIQVEALKIQSNELVAVNCHLRFENLLDESIEVNSPRNGVLHLIRKINPDIFTQSITNGSYNAPFFATRFREALFHYSAIY 457
                          ***9************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d +++ +pre+e+r ++Erellgrei+nv+aceg+er+er et+++W  r ++aGFk++pl+e+ +++ ++ l++ + + +  +e+++++
  Glyma.11G138400.2.p 458 DLIDTVIPRENEWRLMLERELLGREIMNVIACEGSERIERPETYKQWYVRNTRAGFKQLPLNEELMAKFRTKLKEWYHRDFVFDEDNKWM 547
                          *****************************************************************************999********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          ++gWk+r L++ ++W
  Glyma.11G138400.2.p 548 LQGWKGRILYASTCW 562
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.67162543IPR005202Transcription factor GRAS
PfamPF035148.8E-116188562IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MTHSPCKLPR NPSTMLSPAT YLFLPINTPF FSVPKLKPPP PPPPAAAAAV ATTIFQMNIL  60
FRRGFEEASK FLPPGPNLVT ALHSKREEPI NSFGDNSYGL LKGRKNHQRQ EIETREEGEG  120
ERSNKQSALS LVDESDLSDA FDRLLLHEGN LCDEHIRLTS GSVNVEERDG GKGRSKKQGR  180
RKKETVDLRN LLLMCSQSVY ANDNRTANEL LKQIRQHSSP VGDASQRLAH YFTNGLEARL  240
VGDGTSAQGM YTFLSSKNIT VAEFLKAYQV FTSSSPFKKF IHFFANKMIM KAAAKAETVH  300
IIDFGILYGF QWPILIKFFS NREGGPPKLR ITGIEFPQPG FRPAERIEET GHRLANYCKR  360
YNVPFEYNAI ASKNWENIQV EALKIQSNEL VAVNCHLRFE NLLDESIEVN SPRNGVLHLI  420
RKINPDIFTQ SITNGSYNAP FFATRFREAL FHYSAIYDLI DTVIPRENEW RLMLERELLG  480
REIMNVIACE GSERIERPET YKQWYVRNTR AGFKQLPLNE ELMAKFRTKL KEWYHRDFVF  540
DEDNKWMLQG WKGRILYAST CWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-561775647379Protein SCARECROW
5b3h_D2e-561775647379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171182KGRSKKQGRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217510.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G138400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539082.10.0scarecrow-like protein 14
RefseqXP_028191532.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0R0HGT70.0A0A0R0HGT7_SOYBN; Uncharacterized protein
STRINGGLYMA11G14720.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-165GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]