PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G138300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 632aa MW: 72173.4 Da PI: 6.2999 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 372.6 | 5.3e-114 | 254 | 628 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lLl c + v ++d++ a++lL+++++++sp gd+ qRla+yf+++L+arl++ +++ + ++++ + +e l+ ++ f +sP+ Glyma.11G138300.1.p 254 LRNLLLMCSQSVYANDNRTANELLKQIRQHSSPVGDASQRLAHYFANGLEARLVGDGTSSQGMYTFLSSKNITAAEFLKTHQDFMSASPF 343 6899**************************************************94444433334444444449999999999******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 kf+++ aN++I++a+++ e+vHiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g +e++ etg+rLa+++++ vpfe+ Glyma.11G138300.1.p 344 KKFTYFFANKMIMKAAAKVETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGfrPTEKIDETGRRLANYCKRYSVPFEY 433 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n++++k++e++++e+L+++++E +aVn++ + ++lld+s +++s+r++vL+l+++++P++++ + + ++n++ F+ rf eal +ysa++ Glyma.11G138300.1.p 434 NAIASKNWETIRIEALKIESNELVAVNCHQRFENLLDDSIEVNSPRNAVLHLIRKINPNIFTQSITNGSYNAPFFAPRFREALFHYSAIY 523 ***99************************************************************************************* PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d +++ ++re+e r ++Erellgrei+nv+aceg+er+er et+++W+ r ++aGFk++pl+e+ +++ ++ lrk + + + +e+s+++ Glyma.11G138300.1.p 524 DLIDTIIHRENERRLMIERELLGREIMNVIACEGSERIERPETYKQWQVRNMKAGFKQLPLDEELMAKFRTELRKWYHRDFVSDEDSNWM 613 *****************************************************************************999********** PP GRAS 359 vlgWkdrpLvsvSaW 373 +lgWk+r L++ ++W Glyma.11G138300.1.p 614 LLGWKGRILFASTCW 628 *************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.602 | 228 | 609 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-111 | 254 | 628 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 632 aa Download sequence Send to blast |
MEDNDFSETA KFISQILMEE NVELEQSPFY DSLTLQVTEK SFYDALAGNL LLSPQASNTN 60 FSVENSRELN LPSPDSLSVS ALQFNPHALS QPPPLVNVSE GVSDLDSSIA RLLAHNIFND 120 VDSVSHFRRG FEEASRFLPP GPNLVTALHS NAQEPINSFR ENSYGLLKGR KNLERQEINT 180 REEERGGRSN KQSAFSFVDE SDLSDAIDRV FLSVENVCSE HSSLQSGPLR AEEQDRGKGL 240 SKKQERRKQE TVDLRNLLLM CSQSVYANDN RTANELLKQI RQHSSPVGDA SQRLAHYFAN 300 GLEARLVGDG TSSQGMYTFL SSKNITAAEF LKTHQDFMSA SPFKKFTYFF ANKMIMKAAA 360 KVETVHIIDF GILYGFQWPI LIKFLSNREG GPPKLRITGI EFPQPGFRPT EKIDETGRRL 420 ANYCKRYSVP FEYNAIASKN WETIRIEALK IESNELVAVN CHQRFENLLD DSIEVNSPRN 480 AVLHLIRKIN PNIFTQSITN GSYNAPFFAP RFREALFHYS AIYDLIDTII HRENERRLMI 540 ERELLGREIM NVIACEGSER IERPETYKQW QVRNMKAGFK QLPLDEELMA KFRTELRKWY 600 HRDFVSDEDS NWMLLGWKGR ILFASTCWVP A* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-54 | 243 | 630 | 8 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.4417 | 0.0 | hypocotyl| leaf| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G138300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539081.2 | 0.0 | scarecrow-like protein 34 | ||||
Refseq | XP_028191349.1 | 0.0 | scarecrow-like protein 34 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A0R0HGV4 | 0.0 | A0A0R0HGV4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G14710.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G138300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|