PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G138000.1.p
Common NameGLYMA_11G138000, LOC100793210
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 681aa    MW: 76497.8 Da    PI: 6.0966
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G138000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.33.8e-1153126783374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+av+s d++ a+++L+++++++sp+gd +qRla+yf+ +L++rla    ++ k ++ +++s    ++ l+a++++  +sP+l+
  Glyma.11G138000.1.p 312 TLLTQCAQAVASFDQRTANETLKQIRQHSSPYGDGLQRLAHYFADGLEKRLAA---GTPKFISFQSAS---AADMLKAYRVYISASPFLR 395
                          69**************************************************9...555556666666...899**************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          +s+++aN++Il+ +++e+ +HiiDf+is+G+QWp+L+q L++Rp+gpp+lR+ g++ p++g   +e++eetg+ L+k+++++gvpfe+n 
  Glyma.11G138000.1.p 396 MSNFLANSTILKLAQNESSIHIIDFGISYGFQWPCLIQRLSERPGGPPKLRMMGIDLPQPGfrPAERVEETGRWLEKYCKRFGVPFEYNC 485
                          ************************************************************9***************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           +a+++e+++le+L++++ E+++Vn+ ++l++l de+v+ + +rd++L+l+++++P+++ +   +  +n++ F++rf eal ++s+lfd+
  Glyma.11G138000.1.p 486 -LAQKWETIRLEDLKIDRSEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGIVNGTYNAPFFVTRFREALFHFSSLFDM 574
                          .6**************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          +ea++pre+  r ++E+ l+gr++ nv+acegaer+er et+++W+ r ++aGFk++pl ++ ++ +k +++k + + + v e+ +++++
  Glyma.11G138000.1.p 575 FEANVPREDPSRLMIEKGLFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQLPLAQEHVNRVKEMVKKEYHKDFVVGEDGKWVLQ 664
                          ***************************************************************************888************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gWk+r L++vS+W+
  Glyma.11G138000.1.p 665 GWKGRILFAVSSWT 678
                          *************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.324284658IPR005202Transcription factor GRAS
PfamPF035141.3E-112312678IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MLSTDSLLEN FPFVNGPISV FSNQNPESGF KVDDSCSPSE SVTDSGPSSG TSSNGEHAES  60
TKHSNPILRY ISDILMDEEV DLERKPCMLQ DCLRLQAAEK SFYDALVRSY PSSTGQFNDN  120
PDPDDNFGGT TSSESFSSYT TDNSCESDWF NGASDLDSSF LQRSLIDSLE HTYVAPDLFR  180
ETQAGVHFSN GAWNLIHLQN KPRAIEDGVM RGSVTATGLR EKRSYQMNDI SHEEEEKSNK  240
LSAVYLDDSE PSSMFDDVLL CKDGKSPSIF YAGREPSPSQ IADSGGSNGK KTRSKKGSNK  300
RTSASATVDL WTLLTQCAQA VASFDQRTAN ETLKQIRQHS SPYGDGLQRL AHYFADGLEK  360
RLAAGTPKFI SFQSASAADM LKAYRVYISA SPFLRMSNFL ANSTILKLAQ NESSIHIIDF  420
GISYGFQWPC LIQRLSERPG GPPKLRMMGI DLPQPGFRPA ERVEETGRWL EKYCKRFGVP  480
FEYNCLAQKW ETIRLEDLKI DRSEVTVVNC LYRLKNLSDE TVTANCPRDA LLRLIRRINP  540
NIFMHGIVNG TYNAPFFVTR FREALFHFSS LFDMFEANVP REDPSRLMIE KGLFGRDAIN  600
VIACEGAERV ERPETYKQWQ VRNQRAGFKQ LPLAQEHVNR VKEMVKKEYH KDFVVGEDGK  660
WVLQGWKGRI LFAVSSWTPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4931667925380Protein SCARECROW
5b3h_A1e-4931667924379Protein SCARECROW
5b3h_D1e-4931667924379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.184680.0root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G138000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539078.10.0scarecrow-like protein 14
RefseqXP_028190942.10.0scarecrow-like protein 14
SwissprotQ9XE581e-179SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A445I1M60.0A0A445I1M6_GLYSO; Scarecrow-like protein 14
TrEMBLI1LK060.0I1LK06_SOYBN; Uncharacterized protein
STRINGGLYMA11G14670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]