PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G126600.1.p
Common NameGLYMA_11G126600, LOC100814674
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 386aa    MW: 43791.3 Da    PI: 6.8073
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G126600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.6e-10179237563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+     +++e+
  Glyma.11G126600.1.p 179 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTTGMTAEN 237
                          9********************************************99988777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-16175239IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.783177240IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-8177230No hitNo description
SuperFamilySSF579593.44E-11179230No hitNo description
PfamPF001704.3E-9179231IPR004827Basic-leucine zipper domain
CDDcd147037.28E-23180229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDNRDNKSPP PLPPSSSRYV KSEQQASLSA SSSFSHDDIS GMPENPPKNR GHRRAHSEII  60
TLPDDLTFDV DLPDDNDLLS IYLQFDQLDS SPLPLPPPPQ HNSIANNNNN NNNKNNNNNN  120
ERPTRVRHQH SLSMDGSIHP DMLLSATAAA ADDVSGGGID TKKAMSADKL AELALVDPKR  180
AKRIWANRQS AARSKERKMR YISELERKVQ TLQTEATSLS AQLTLLQRDT TGMTAENSEL  240
KLRLQTMEQQ VHLQDALNDA LKEEIQHLKA LTGQVMPNGG PVNFASFGGG QQFYPNNQAM  300
HTLLAAQKFQ QLQIHSQKQH QLQQQQQFQQ QQQFQQLQQL QLQQQQQLQL QQQQQQQQQQ  360
QQQQQQQQQQ QQQLQLQQQQ QQQEQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.403880.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G126600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-51AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539041.10.0probable transcription factor PosF21
RefseqXP_028186198.10.0probable transcription factor PosF21
SwissprotQ040881e-111POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A445I1590.0A0A445I159_GLYSO; Putative transcription factor PosF21 isoform A
TrEMBLI1LJN80.0I1LJN8_SOYBN; Uncharacterized protein
STRINGGLYMA11G13510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-93bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]