PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G125500.2.p

Common Name

GLYMA_11G125500, LOC100812527

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 966aa MW: 106779 Da PI: 5.869

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G125500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8.1e-29	600	650	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e+++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Glyma.11G125500.2.p 600 ENNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	582	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	602	650	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	8.6E-23	862	944	No hit	No description
SuperFamily	SSF54277	4.91E-21	862	949	No hit	No description
SMART	SM00666	3.1E-22	865	947	IPR000270	PB1 domain
PROSITE profile	PS51745	23.064	865	947	IPR000270	PB1 domain
CDD	cd06407	4.31E-30	866	946	No hit	No description
Pfam	PF00564	2.7E-17	868	946	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence Send to blast
MEDHVSPEGK EVSCCTPPGA QLEEPTSVDG GMKKSASEDM FSNFSELMNF DTYAGWSNSP 60 SMTDQSLANV FSSFSLAPYP VPDVLNLVEH GNGPFFMTED SEIHNDMESA PSCGERIIFQ 120 QMDFQLGFLD EANDSNSLDS KQKPNGTSQE VNTTDMCNYI ISSSPGRSLD DRMLRALSFF 180 MESADGGMLA QVWVPIKHGD EFILSTSEQP YLLDPKLAGY REVSRAFTFS AEGKTQSCPG 240 LPARVFISHV PEWTSNVGYY NKTEYLRLEH ARNHEIRGSI ALPISDVHSQ VPCAVLELVT 300 TKEKPNFDRE LEIVSQALQL VNLRTTMPPR LHPQCLSSNK RAALTEIIDV LRAVCHAHRL 360 PLALTWIPCC YSEGIRNETD RIRIKEGHTS PNEKCVLCIE ESACYVNDGA VEGFVHACVE 420 HHLEEGQGIA GKALQSNHPF FYTDVKTYDI GEYPLVHHAR KYNLNAAVAI RLRSTYTNDD 480 DYILEFFLPV NMTGSSEQEL LLDNLSSTMR RICKSLRTVS DAELTGIEGS QGGFPKEKVS 540 GFFPMSRRNS QIAFISDDHD SVLKMSLKAS NMRNNGIEAV HSQTMNGSRK QVEKKRSTVE 600 NNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKFDPYTGGF IAGGSIMQET EAHKYLVFPE KSSVKDPKPA TQKKVSVAPA 720 PASTIENSTI KLNDDEGVCL VGNKLVHSRS IPNSNSGEGE LKKDNVSSDD SKSMTMNDGS 780 CHKACHWKKT KDCPEQTCSM SLVTDEVEVG VDRVEGADEH NHPTSSSTTN SSNGSGSMMH 840 GSSSCSHENQ KYSKVKSNCV DSGSKMIVKA SYRGDTIRFK FDPSSGCFQL YKEVATRFKL 900 QNGSFQLKYL DDEEEWVMLV NDSDLQECTE ILDDIGTRCV KFLVRDVPCV LSSHGSNSCF 960 LSDSS*

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence Send to blast

MEDHVSPEGK EVSCCTPPGA QLEEPTSVDG GMKKSASEDM FSNFSELMNF DTYAGWSNSP  60
SMTDQSLANV FSSFSLAPYP VPDVLNLVEH GNGPFFMTED SEIHNDMESA PSCGERIIFQ  120
QMDFQLGFLD EANDSNSLDS KQKPNGTSQE VNTTDMCNYI ISSSPGRSLD DRMLRALSFF  180
MESADGGMLA QVWVPIKHGD EFILSTSEQP YLLDPKLAGY REVSRAFTFS AEGKTQSCPG  240
LPARVFISHV PEWTSNVGYY NKTEYLRLEH ARNHEIRGSI ALPISDVHSQ VPCAVLELVT  300
TKEKPNFDRE LEIVSQALQL VNLRTTMPPR LHPQCLSSNK RAALTEIIDV LRAVCHAHRL  360
PLALTWIPCC YSEGIRNETD RIRIKEGHTS PNEKCVLCIE ESACYVNDGA VEGFVHACVE  420
HHLEEGQGIA GKALQSNHPF FYTDVKTYDI GEYPLVHHAR KYNLNAAVAI RLRSTYTNDD  480
DYILEFFLPV NMTGSSEQEL LLDNLSSTMR RICKSLRTVS DAELTGIEGS QGGFPKEKVS  540
GFFPMSRRNS QIAFISDDHD SVLKMSLKAS NMRNNGIEAV HSQTMNGSRK QVEKKRSTVE  600
NNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LDSVQGVEGG LKFDPYTGGF IAGGSIMQET EAHKYLVFPE KSSVKDPKPA TQKKVSVAPA  720
PASTIENSTI KLNDDEGVCL VGNKLVHSRS IPNSNSGEGE LKKDNVSSDD SKSMTMNDGS  780
CHKACHWKKT KDCPEQTCSM SLVTDEVEVG VDRVEGADEH NHPTSSSTTN SSNGSGSMMH  840
GSSSCSHENQ KYSKVKSNCV DSGSKMIVKA SYRGDTIRFK FDPSSGCFQL YKEVATRFKL  900
QNGSFQLKYL DDEEEWVMLV NDSDLQECTE ILDDIGTRCV KFLVRDVPCV LSSHGSNSCF  960
LSDSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G125500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235172	0.0	AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539038.1	0.0	protein NLP9
Refseq	XP_028188098.1	0.0	protein NLP9-like
Refseq	XP_028188099.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0B2PEY2	0.0	A0A0B2PEY2_GLYSO; Protein NLP8
TrEMBL	K7LPE4	0.0	K7LPE4_SOYBN; Uncharacterized protein
STRING	GLYMA11G13390.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.11G125500.2.p
Entrez Gene	100812527

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]