PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G125500.1.p

Common Name

GLYMA_11G125500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 1005aa MW: 111208 Da PI: 6.1221

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G125500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.5e-29	639	689	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e+++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Glyma.11G125500.1.p 639 ENNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 689 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	621	709	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	641	689	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-21	901	988	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.0E-23	901	983	No hit	No description
PROSITE profile	PS51745	23.064	904	986	IPR000270	PB1 domain
SMART	SM00666	3.1E-22	904	986	IPR000270	PB1 domain
CDD	cd06407	4.38E-30	905	985	No hit	No description
Pfam	PF00564	2.8E-17	907	985	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence Send to blast
MMRLLGCWLT RTKPLVQSLI QRNSNIGQIS TSIFLSNLIM EDHVSPEGKE VSCCTPPGAQ 60 LEEPTSVDGG MKKSASEDMF SNFSELMNFD TYAGWSNSPS MTDQSLANVF SSFSLAPYPV 120 PDVLNLVEHG NGPFFMTEDS EIHNDMESAP SCGERIIFQQ MDFQLGFLDE ANDSNSLDSK 180 QKPNGTSQEV NTTDMCNYII SSSPGRSLDD RMLRALSFFM ESADGGMLAQ VWVPIKHGDE 240 FILSTSEQPY LLDPKLAGYR EVSRAFTFSA EGKTQSCPGL PARVFISHVP EWTSNVGYYN 300 KTEYLRLEHA RNHEIRGSIA LPISDVHSQV PCAVLELVTT KEKPNFDREL EIVSQALQLV 360 NLRTTMPPRL HPQCLSSNKR AALTEIIDVL RAVCHAHRLP LALTWIPCCY SEGIRNETDR 420 IRIKEGHTSP NEKCVLCIEE SACYVNDGAV EGFVHACVEH HLEEGQGIAG KALQSNHPFF 480 YTDVKTYDIG EYPLVHHARK YNLNAAVAIR LRSTYTNDDD YILEFFLPVN MTGSSEQELL 540 LDNLSSTMRR ICKSLRTVSD AELTGIEGSQ GGFPKEKVSG FFPMSRRNSQ IAFISDDHDS 600 VLKMSLKASN MRNNGIEAVH SQTMNGSRKQ VEKKRSTVEN NVSLSVLQQY FSGSLKDAAK 660 SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL DSVQGVEGGL KFDPYTGGFI 720 AGGSIMQETE AHKYLVFPEK SSVKDPKPAT QKKVSVAPAP ASTIENSTIK LNDDEGVCLV 780 GNKLVHSRSI PNSNSGEGEL KKDNVSSDDS KSMTMNDGSC HKACHWKKTK DCPEQTCSMS 840 LVTDEVEVGV DRVEGADEHN HPTSSSTTNS SNGSGSMMHG SSSCSHENQK YSKVKSNCVD 900 SGSKMIVKAS YRGDTIRFKF DPSSGCFQLY KEVATRFKLQ NGSFQLKYLD DEEEWVMLVN 960 DSDLQECTEI LDDIGTRCVK FLVRDVPCVL SSHGSNSCFL SDSS*

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence Send to blast

MMRLLGCWLT RTKPLVQSLI QRNSNIGQIS TSIFLSNLIM EDHVSPEGKE VSCCTPPGAQ  60
LEEPTSVDGG MKKSASEDMF SNFSELMNFD TYAGWSNSPS MTDQSLANVF SSFSLAPYPV  120
PDVLNLVEHG NGPFFMTEDS EIHNDMESAP SCGERIIFQQ MDFQLGFLDE ANDSNSLDSK  180
QKPNGTSQEV NTTDMCNYII SSSPGRSLDD RMLRALSFFM ESADGGMLAQ VWVPIKHGDE  240
FILSTSEQPY LLDPKLAGYR EVSRAFTFSA EGKTQSCPGL PARVFISHVP EWTSNVGYYN  300
KTEYLRLEHA RNHEIRGSIA LPISDVHSQV PCAVLELVTT KEKPNFDREL EIVSQALQLV  360
NLRTTMPPRL HPQCLSSNKR AALTEIIDVL RAVCHAHRLP LALTWIPCCY SEGIRNETDR  420
IRIKEGHTSP NEKCVLCIEE SACYVNDGAV EGFVHACVEH HLEEGQGIAG KALQSNHPFF  480
YTDVKTYDIG EYPLVHHARK YNLNAAVAIR LRSTYTNDDD YILEFFLPVN MTGSSEQELL  540
LDNLSSTMRR ICKSLRTVSD AELTGIEGSQ GGFPKEKVSG FFPMSRRNSQ IAFISDDHDS  600
VLKMSLKASN MRNNGIEAVH SQTMNGSRKQ VEKKRSTVEN NVSLSVLQQY FSGSLKDAAK  660
SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL DSVQGVEGGL KFDPYTGGFI  720
AGGSIMQETE AHKYLVFPEK SSVKDPKPAT QKKVSVAPAP ASTIENSTIK LNDDEGVCLV  780
GNKLVHSRSI PNSNSGEGEL KKDNVSSDDS KSMTMNDGSC HKACHWKKTK DCPEQTCSMS  840
LVTDEVEVGV DRVEGADEHN HPTSSSTTNS SNGSGSMMHG SSSCSHENQK YSKVKSNCVD  900
SGSKMIVKAS YRGDTIRFKF DPSSGCFQLY KEVATRFKLQ NGSFQLKYLD DEEEWVMLVN  960
DSDLQECTEI LDDIGTRCVK FLVRDVPCVL SSHGSNSCFL SDSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G125500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235172	0.0	AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539038.1	0.0	protein NLP9
Refseq	XP_028188098.1	0.0	protein NLP9-like
Refseq	XP_028188099.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	K7LPE3	0.0	K7LPE3_SOYBN; Uncharacterized protein
STRING	GLYMA11G13390.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.11G125500.1.p

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]