PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G125200.8.p
Common NameGLYMA_11G125200, LOC100811445
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 337aa    MW: 39472.8 Da    PI: 4.9236
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G125200.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567e-1811102198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv++p     s r+ +p+ f++  +++ + + +++l++ sgr+W+vk   r  +++ ++ +GW+ F ++n L   Df+vFk+d+++ef
  Glyma.11G125200.8.p  11 FFKVFLP--ERHSERMLIPNAFVRLPQSQGRIPEDVILRNISGRVWQVKT--RYIGEKLYFDDGWNAFHEENCLGHADFLVFKHDRSNEF 96 
                          8899955..5555679*******77788888999****************..888888*************************9887777 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v +++
  Glyma.11G125200.8.p  97 --KVLILE 102
                          ..777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-207104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-187104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3669104IPR003340B3 DNA binding domain
CDDcd100171.76E-179101No hitNo description
SMARTSM010193.8E-1511104IPR003340B3 DNA binding domain
PfamPF023626.0E-1511101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-5256334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-5257331IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTTGAERYPD FFKVFLPERH SERMLIPNAF VRLPQSQGRI PEDVILRNIS GRVWQVKTRY  60
IGEKLYFDDG WNAFHEENCL GHADFLVFKH DRSNEFKVLI LESSTQCQKP VVKMEEENEQ  120
EQAAAQHAED CDIEEEEDSS SKDENYDDDS DDSDFDDDEE SKEEFGAGFK SQSHHRRACK  180
RETASSSNPD AEDPLPEYVF DPEMCIQREN HFFKAKLYRT RPNELHIPGN SIQEFSLTFP  240
ENYVTLICCQ PCQRKDIPMN ELGDYHHNLT QQTHIRKKYQ EVTGRVCRWQ DRICIKGWAS  300
FSKRNKIERN DTCFCEVISG EDQVVRTLEV HVARRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G125200.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351720.0AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539036.10.0B3 domain-containing protein REM20
RefseqXP_006590924.10.0B3 domain-containing protein REM20
RefseqXP_006590925.10.0B3 domain-containing protein REM20
RefseqXP_006590926.10.0B3 domain-containing protein REM20
RefseqXP_006590927.10.0B3 domain-containing protein REM20
RefseqXP_014619491.10.0B3 domain-containing protein REM20
RefseqXP_014619492.10.0B3 domain-containing protein REM20
RefseqXP_014619493.10.0B3 domain-containing protein REM20
RefseqXP_025980182.10.0B3 domain-containing protein REM20
RefseqXP_028188745.10.0B3 domain-containing protein REM20-like
RefseqXP_028188746.10.0B3 domain-containing protein REM20-like
RefseqXP_028188747.10.0B3 domain-containing protein REM20-like
RefseqXP_028188748.10.0B3 domain-containing protein REM20-like
RefseqXP_028188749.10.0B3 domain-containing protein REM20-like
RefseqXP_028188750.10.0B3 domain-containing protein REM20-like
TrEMBLA0A0B2PA170.0A0A0B2PA17_GLYSO; B3 domain-containing protein REM21
TrEMBLK7LPD90.0K7LPD9_SOYBN; Uncharacterized protein
STRINGGLYMA11G13350.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-14B3 family protein