PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G124200.2.p | ||||||||
Common Name | GLYMA_11G124200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 342aa MW: 39767.1 Da PI: 9.051 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.8 | 4.5e-14 | 40 | 120 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++l +p +f+++ +++ +l +sg +W+v++ kk++ +++ +GW++F k+n + +f++F+++g ++f +v++f Glyma.11G124200.2.p 40 NTKQLKVPEEFLKHLNKD--LWSNSVLIGPSGDKWQVTI--LKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCF--YVQIFG 120 457799******655544..4446899************..********************************999999..999986 PP | |||||||
2 | B3 | 65.5 | 7.7e-21 | 242 | 336 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 l+++ +l++++l + +fa+++ + e ++ l +++g+sWev++ y +++++ +++GW++Fv++n+L gD+++F++++ ++++ Glyma.11G124200.2.p 242 HLLTKCNLERCILLIAAEFARKYI-P-EALEQIYLWNSEGKSWEVRVHYFRNRNTwyAAFKRGWERFVRDNKLMKGDTCIFEVEE-EQGH 328 567788999**************4.2.33448***************99555555478899*********************755.9999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 v++fr+ Glyma.11G124200.2.p 329 WSVHIFRT 336 9****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-17 | 29 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.252 | 29 | 122 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-18 | 29 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.96E-12 | 34 | 119 | No hit | No description |
SMART | SM01019 | 3.1E-13 | 34 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-11 | 40 | 120 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-24 | 232 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-21 | 233 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.916 | 239 | 337 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-13 | 239 | 337 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-18 | 242 | 336 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.55E-16 | 244 | 335 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MRDFSFHSND LLILQGNNRE RWKMDYHQDN PAVFFTTIKN TKQLKVPEEF LKHLNKDLWS 60 NSVLIGPSGD KWQVTILKKG NNVYMDNGWS QFLKDNSVVL DEFLLFTYHG GNCFYVQIFG 120 GNGLERLCRK EAREEQAATP QFFDLPFSNK ASISDGCEIK KTRQEQASAP SLARTNKSKQ 180 RKTFVGSSHL HESNSYKKDL PFSNKASLSK DFPKPQSSIN IECSEACKLA ESFTSRNPHW 240 KHLLTKCNLE RCILLIAAEF ARKYIPEALE QIYLWNSEGK SWEVRVHYFR NRNTWYAAFK 300 RGWERFVRDN KLMKGDTCIF EVEEEQGHWS VHIFRTGCAP H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G124200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT321660 | 0.0 | KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590919.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Refseq | XP_028186694.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
TrEMBL | A0A0R0HG42 | 0.0 | A0A0R0HG42_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G13220.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G124200.2.p |