PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G124100.3.p
Common NameGLYMA_11G124100, LOC100815020
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 432aa    MW: 48890.6 Da    PI: 9.1069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G124100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.7e-19696197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                         f k l+ps v  +++l+lp +f++++gg+   s  +tl  ++g +W v l  +k +++y + +GWkeFv+   + +g  +vF+++g+s+f  
  Glyma.11G124100.3.p  6 FHKLLLPSTVQPNQQLRLPDNFMRKYGGE--LSPIVTLSVPDGSVWHVGL--KKADNKYCFLDGWKEFVQRYSIGVGYLLVFRYEGKSSF-- 91
                         899***********************887..7779***************..*********************************99999.. PP

                         EEEEE CS
                   B3 93 vvkvf 97
                         +v++f
  Glyma.11G124100.3.p 92 NVHIF 96
                         88887 PP
2B355.31.2e-17301390497
                          E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++    k+gr  l++GW eF  +n+L egD++vF+l + +e  l
  Glyma.11G124100.3.p 301 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRC--LYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVL 385
                          78899******************877743...59**************..66666778***********************998788878 PP

                          EEEEE CS
                   B3  93 vvkvf 97 
                           v++f
  Glyma.11G124100.3.p 386 QVTIF 390
                          88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-24297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-25397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-22497No hitNo description
PfamPF023621.4E-16696IPR003340B3 DNA binding domain
SMARTSM010191.2E-18699IPR003340B3 DNA binding domain
PROSITE profilePS5086314.367699IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-24290391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-24291391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-21296390No hitNo description
SMARTSM010194.9E-15298393IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592298393IPR003340B3 DNA binding domain
PfamPF023621.2E-15301390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELSPIVT LSVPDGSVWH VGLKKADNKY  60
CFLDGWKEFV QRYSIGVGYL LVFRYEGKSS FNVHIFNLAT SEINYQSVTR SSNEGLHFTN  120
CLKFFEEMEG EDSIEISDSS PSHLSPSSLQ NQALAGSVDK MMPGKSYNTP PALQNLFNGS  180
KLNSINWGEG GNAHSSRSAN SLDNRLTRDI GLQFNAVEFK RSTEELKLRA SIEERMKKTT  240
RKKRKSDGQE PSAGHEEEVE MRFRFYESAS ARKRTVTAEE RERVINEAKA FEPSNPFCRV  300
VLRPSYLYRG CIMYLPSCFA EKHLNGVSGF IKLQISNGRQ WPVRCLYKGG RAKLSQGWFE  360
FSLENNLGEG DVCVFELLRM KEVVLQVTIF HVTEDVGLLS PPLQHNQNMT SAKLLSTPLQ  420
QHLTSTKMVR N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-7126439615146B3 domain-containing transcription factor VRN1
4i1k_B3e-7126439615146B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.413110.0hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G124100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351720.0AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980181.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_028186695.10.0B3 domain-containing transcription factor VRN1-like isoform X1
SwissprotQ8L3W11e-126VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0B2PF210.0A0A0B2PF21_GLYSO; B3 domain-containing transcription factor VRN1
TrEMBLI1LJK60.0I1LJK6_SOYBN; Uncharacterized protein
STRINGGLYMA11G13210.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-73B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]