PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G117100.1.p
Common NameGLYMA_11G117100, LOC100794256
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 422aa    MW: 46058.6 Da    PI: 7.3395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G117100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09222269455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.11G117100.1.p 222 SHSLAERVRREKISERMKYLQDLVPGC----NKVAGKAGMLDEIINYVQSLQ 269
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-17216287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.68E-10216273No hitNo description
Gene3DG3DSA:4.10.280.101.9E-17218285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6222269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLHCLNTSGN LGATCSDMTV LERQREATIK WQQHLQNNQP PYLTDFNVNV NAVFSSSSSS  60
SQSQGLVMNI CADSALGEVL THSVKPDPGV WPEFDAGFGS SSGFLPTISP TCSRGGDLVS  120
PKENMASAKE NTKKRKPQNS KVVVAASDNK QDKRVKASGE EGESKVTEQT SNKNGKSNAN  180
KNNNRETTSA ETSKDNSKGS EVQNQKPEYI HVRARRGQAT DSHSLAERVR REKISERMKY  240
LQDLVPGCNK VAGKAGMLDE IINYVQSLQR QVEFLSMKLA AVNPRLDFNL DELFTKEVFP  300
SCAQSFPNIG MPLDMSMSNN PSYLPFNSAQ QLVSCCGGLI NNMGISPPNM GLRRNISTSP  360
VPLPETFLDS SCFTQILPSS NWEGGDFQSL YNVAFDQGRT ASFPSQPFTG LVEASNLKME  420
M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.362340.0cotyledon| hypocotyl| stem| vegetative bud
Function -- GeneRIF ? help Back to Top
  1. Blue light-dependent interaction between cryptochrome2 and CIB1 regulates transcription and leaf senescence.[CIB1]
    [PMID: 24272488]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G117100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983030.0BT098303.1 Soybean clone JCVI-FLGm-23G1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590895.10.0basic helix-loop-helix transcription activator CIB1 isoform X1
RefseqXP_028187331.10.0transcription factor HBI1-like isoform X1
TrEMBLA0A445I0R00.0A0A445I0R0_GLYSO; Transcription factor bHLH49 isoform A
TrEMBLK7LP950.0K7LP95_SOYBN; Uncharacterized protein
STRINGGLYMA11G12450.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.29e-55bHLH family protein
Publications ? help Back to Top
  1. Meng Y,Li H,Wang Q,Liu B,Lin C
    Blue light-dependent interaction between cryptochrome2 and CIB1 regulates transcription and leaf senescence in soybean.
    Plant Cell, 2013. 25(11): p. 4405-20
    [PMID:24272488]