PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G113200.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 216aa    MW: 24179.3 Da    PI: 9.1277
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G113200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702936.2e-29770470
               DUF702  4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaea 70
                         ++++C+dCGnqakkdC+++RCRtCCk+++f+C+th++stW+p+++rr+++ +++ ++++ +a+    
  Glyma.11G113200.1.p  7 KGSKCEDCGNQAKKDCEYSRCRTCCKNKAFKCQTHIRSTWIPVDRRRHQKLEHQPLTTNLKAD---T 70
                         6789********************************************866666665554433...3 PP
2DUF702761.1e-237213889155
               DUF702  89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
                           k +++++ ++le  ++P+ +ss+a+f+cv+v+s+dd  +e+aYqt+v+igGhvf+G+LydqG++++
  Glyma.11G113200.1.p  72 PKRHKHNPYSSLEEFKFPAVMSSMALFSCVQVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPQQQ 138
                          4445667777888888************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-448136IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-241052IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.2E-2087135IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEAQVVKGSK CEDCGNQAKK DCEYSRCRTC CKNKAFKCQT HIRSTWIPVD RRRHQKLEHQ  60
PLTTNLKADT IPKRHKHNPY SSLEEFKFPA VMSSMALFSC VQVRSMDDTV NEIAYQTSVN  120
IGGHVFSGLL YDQGPQQQSF NVSKGDNNSS IDPFVQQHSL NLRSSASIHT RNGASANMPP  180
LSATASAQEP FFPPPHPFPL ASFRPDMRYL SHPKP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G113200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5808232e-46AJ580823.1 Lotus corniculatus var. japonicus ORF1, ORF2, ORF3 and genes for vacuolar proton-ATPase subunit-like protein, papain-like cysteine proteinase-like protein 1 and papain-like cysteine proteinase-like protein 2.
GenBankAP0056662e-46AP005666.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT09E01, TM0258b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590877.21e-162protein SHI RELATED SEQUENCE 1
RefseqXP_028191137.11e-163protein SHI RELATED SEQUENCE 3-like, partial
SwissprotQ9SJT84e-46SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A445I0371e-161A0A445I037_GLYSO; Protein SHI RELATED SEQUENCE 3 (Fragment)
STRINGGLYMA11G12101.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.11e-48SHI-related sequence3