PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G110700.1.p
Common NameGLYMA_11G110700, LOC100787567
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 342aa    MW: 38021.9 Da    PI: 7.6759
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G110700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.47.1e-2589133145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Glyma.11G110700.1.p  89 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 133
                          79****************************************986 PP
2QLQ57.63.8e-202460137
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         s+FT +Q+q+L++Q+l++Ky++a++PvP +L+++iq+
  Glyma.11G110700.1.p 24 SPFTVSQWQELEHQALIFKYMLAGLPVPLDLVFPIQN 60
                         89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.8E-112460IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3082560IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.1E-152559IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76289133IPR014977WRC domain
PfamPF088793.1E-2190132IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNNSSGGGGR GTLMGLSNGY CGRSPFTVSQ WQELEHQALI FKYMLAGLPV PLDLVFPIQN  60
SFHSTISLSH AFFHHPTLSY CSFYGKKVDP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM  120
HRGRNRSRKP VESQTMTHSS STVTSLTVTG GSGASKGTVN FQNLSTNTFG NLQGTDSGTD  180
HTNYHLDSIP YAIPSKEYRY VQGLKSEGGE HCFFSEASGS NKVLQMESQL ENTWPLMSTR  240
VASFSTSKSS NDSLLHSDYP RHSFLSGEYV SGEHVKEEGQ PLRPFFNEWP KSRESWSGLE  300
DERSNQTAFS TTQLSISIPM SSNFSATSSQ SPHGEDEIQF R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.219000.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G110700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352640.0AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539001.10.0growth-regulating factor 5
RefseqXP_028188501.10.0growth-regulating factor 5-like
SwissprotQ6AWY41e-86GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A445I0E70.0A0A445I0E7_GLYSO; Growth-regulating factor 5 isoform A
TrEMBLK7LP510.0K7LP51_SOYBN; Uncharacterized protein
STRINGGLYMA11G11826.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-45growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]