PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G110400.1.p
Common NameGLYMA_11G110400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 558aa    MW: 60949.1 Da    PI: 7.0427
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G110400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.7e-11407465563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +a l++++
  Glyma.11G110400.1.p 407 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQN 465
                          9*************************************************999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-18403467IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909405468IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-11407464No hitNo description
SuperFamilySSF579593.52E-11407458No hitNo description
PfamPF001701.8E-9407465IPR004827Basic-leucine zipper domain
CDDcd147035.71E-25408459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGENEEATTT DMLQRLHFLK QPLNMEQLSI PQFNPSQMRA RHHHQNQNQF DGGNSNKRAG  60
IPPSHPHQIP PISPYSQIPL SRQHSNINSN SNISPTPTHT RSLSQPSFFS LDSLPPLSPS  120
PFRDSSSTSV SEAADVSMED RDVSSHSLLP PSPFSRTLNT NNSNLPLPPR KAHRRSNSDI  180
PFGFSTVLQS SPPLIPLRNP VSAKPAQLVK RETPWDRVVE HNTNTNNNNN VEGSGEKKSP  240
EGEVVDDLFS AYMNLDSFDA LNSSGTDDKN GGENRDDLDS RASGTKTNGG DSSDNEAESS  300
VNESGHGGSE KREGMKRSAG GEIAPTTRHY RSVSMDSFIG KLNFGDESPK LPPSPGQRGG  360
LMSPAGGIDG NSAAFSLEFG NGEFSGPELK KIMANEKLAE IALTDPKRAK RILANRQSAA  420
RSKERKMRYI SELEHKVQTL QTEATTLSAQ LTLLQRDSAG LTNQNSELKF RLQSMEQQAK  480
LRDALNEALT AEVQRLKIAT AELSSDSHGS SCLIPQHSVN PLMFQQQPPS ASQQNIHLQQ  540
QQHRQNGNAN SNSDLKQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.289660.0cotyledon| flower| seed coat| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G110400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-160AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237238.20.0bZIP transcription factor bZIP28
RefseqXP_025980076.10.0bZIP transcription factor bZIP28 isoform X1
RefseqXP_028189627.10.0uncharacterized protein LOC114375951
RefseqXP_028189628.10.0uncharacterized protein LOC114375951
TrEMBLA0A445HZZ30.0A0A445HZZ3_GLYSO; Transcription factor RF2a isoform A
TrEMBLK7LP480.0K7LP48_SOYBN; Uncharacterized protein
STRINGGLYMA11G11791.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-111bZIP family protein