PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G096600.1.p | ||||||||
Common Name | GLYMA_11G096600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34881 Da PI: 8.5705 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.8 | 1.6e-47 | 19 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPt+eel+++yLk+ v gkkl+ +vi ++iy+++PwdLp +k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkatg+d++ Glyma.11G096600.1.p 19 LPGFRFHPTEEELLDFYLKNMVVGKKLRY-DVIGFLNIYQHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRK 107 69**************************9.99***************8888899************************************ PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ +gl+ktLvfy+grap+g ktdWvm+eyrl Glyma.11G096600.1.p 108 IVTLsdPKRIIGLRKTLVFYQGRAPRGCKTDWVMNEYRL 146 *987666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-56 | 15 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.201 | 18 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-25 | 20 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MINMATMEDM SNMSGEITLP GFRFHPTEEE LLDFYLKNMV VGKKLRYDVI GFLNIYQHDP 60 WDLPGLAKVG EREWYFFVPR DKKHGSGGRP NRTTEKGFWK ATGSDRKIVT LSDPKRIIGL 120 RKTLVFYQGR APRGCKTDWV MNEYRLPDNC KLPKEIVLCK IYRKATSLKV LEQRAALEEE 180 REKKQMVDNS PASPPSSTDT MSFSSPQEEQ NLPLPLLQHV LKKESETTED MVVSKQEKTT 240 NQLTLKDTKS TCGTSLQMPF GKEKLPDLQL PMLSDWTQDT FWAQLNSPWL QNFTPTNILN 300 FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-45 | 7 | 164 | 3 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28273 | 0.0 | flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G096600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093658 | 0.0 | BT093658.1 Soybean clone JCVI-FLGm-24E10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242390.2 | 0.0 | NAC domain-containing protein | ||||
Swissprot | Q10S65 | 5e-98 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0R4J4G2 | 0.0 | A0A0R4J4G2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G10230.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6214 | 32 | 51 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-111 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G096600.1.p |
Publications ? help Back to Top | |||
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