PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G096500.1.p
Common NameGLYMA_11G096500, Glyma11g10220.1, LOC100816249
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 443aa    MW: 48212.7 Da    PI: 5.6127
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G096500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3781.2e-115734323374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           lLl+cAe+v+ ++l  a+ lL ++ el+sp+g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++k
  Glyma.11G096500.1.p  73 GLLLQCAECVAMDNLDFANDLLPEIAELSSPYGTSPERVGAYFAQALQARVVSSCIGSYSPLTAKSVTLTQSQKIFNAFQSYNSVSPLVK 162
                          58******************************************************************99******************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          fsh+taNqaI +a++ge+rvHiiD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e l +tg+rLa+fA++lg+pfef ++ 
  Glyma.11G096500.1.p 163 FSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITGFGS----SSELLDSTGRRLADFASSLGLPFEFFPVE 248
                          *********************************************************....99*************************87 PP

                 GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                           k  +  el++L v+p+Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ veq+++h ++sFl+rf+eal+yysalfd+l 
  Glyma.11G096500.1.p 249 GKIGSVTELSQLGVRPNEAIVVHWMH--HCLYDITGSDLG----TLRLLTQLRPKLITTVEQDLSH-AGSFLARFVEALHYYSALFDALG 331
                          77777779****************99..777777777777....**********************.899******************** PP

                 GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                           +l+++s er++vE++llg ei+n+va  g +r+ + + le+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgW
  Glyma.11G096500.1.p 332 DGLGADSLERHTVEQHLLGCEIRNIVAVGGPKRTGEVK-LERWGDELKRAGFGPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGW 420
                          ********************************998887.*************************************************** PP

                 GRAS 363 kdrpLvsvSaWr 374
                          kd +L+ +SaW+
  Glyma.11G096500.1.p 421 KDLSLLIASAWQ 432
                          ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.70445412IPR005202Transcription factor GRAS
PfamPF035144.0E-11373432IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLQSLVPRSP RTSNPNAMKT KRAVDAGGDS PADEPSFKRT NFSGEKTTAE AEEEQAFDPE  60
PHGGDSTGLK LLGLLLQCAE CVAMDNLDFA NDLLPEIAEL SSPYGTSPER VGAYFAQALQ  120
ARVVSSCIGS YSPLTAKSVT LTQSQKIFNA FQSYNSVSPL VKFSHFTANQ AIFQALDGED  180
RVHIIDLDIM QGLQWPGLFH ILASRSKKIR SVRITGFGSS SELLDSTGRR LADFASSLGL  240
PFEFFPVEGK IGSVTELSQL GVRPNEAIVV HWMHHCLYDI TGSDLGTLRL LTQLRPKLIT  300
TVEQDLSHAG SFLARFVEAL HYYSALFDAL GDGLGADSLE RHTVEQHLLG CEIRNIVAVG  360
GPKRTGEVKL ERWGDELKRA GFGPVSLRGN PAAQASLLLG MFPWRGYTLV EENGSLKLGW  420
KDLSLLIASA WQPSDLMITY PD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1636543313380Protein SCARECROW
5b3h_A1e-1636543312379Protein SCARECROW
5b3h_D1e-1636543312379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.237890.0epicotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G096500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311590.0KT031159.1 Glycine max clone HN_CCL_171 GRAS transcription factor (Glyma11g10220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537749.10.0scarecrow-like protein 23
RefseqXP_028189861.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A445I0B10.0A0A445I0B1_GLYSO; Scarecrow-like protein 23
TrEMBLI1LIN30.0I1LIN3_SOYBN; GRAS transcription factor
STRINGGLYMA11G10220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]