PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G091900.6.p
Common NameGLYMA_11G091900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 252aa    MW: 28150.6 Da    PI: 5.4701
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G091900.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.68.8e-2869151271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Glyma.11G091900.6.p  69 SGRGLRQFSMK---VCEKVESrGRTTYNEVADELVAEfsepsnselppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 151
                          689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.9E-1105247IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.2E-4664156IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-3468151IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-2570151IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.99E-2171152IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.18E-34156245IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.18E-33158245No hitNo description
SMARTSM011381.3E-41158251IPR014889Transcription factor DP, C-terminal
PfamPF087811.0E-31159244IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGGDEEEEEV LGSGQSASTN NSLPPPVDKT ILKLNHLDVH ADDAGSHASL ASGKKKKRGG  60
QRAVGPDKSG RGLRQFSMKV CEKVESRGRT TYNEVADELV AEFSEPSNSE LPPDQQQYDE  120
KNIRRRVYDA LNVLMAMDII SKDKKEIQWR GLPRTTVNDI EELKTERLGL RNRIEKKTAY  180
LQELEEQFIG LQNLIQRNEQ LYSSGNPPSG GVSLPFILVQ TRPHATVEVE ISEDMQLVHF  240
DFNSPTPRPL K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-3962153190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.561260.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G091900.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983870.0BT098387.1 Soybean clone JCVI-FLGm-23K1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240098.11e-179uncharacterized protein LOC100800599
RefseqXP_028186289.11e-179transcription factor-like protein DPB isoform X3
SwissprotQ9FNY21e-130DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0R0HQQ50.0A0A0R0HQQ5_SOYBN; Uncharacterized protein
STRINGGLYMA11G09750.11e-178(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-132Transcription factor DP