PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G085500.1.p

Common Name

GLYMA_11G085500, LOC100306328

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 332aa MW: 38388.8 Da PI: 8.8604

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G085500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84	1.4e-26	204	253	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl+dl kyF +pi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Glyma.11G085500.1.p 204 AKISLSDLVKYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 253 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.429	188	273	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	206	253	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDSSHTNTTL LTNLLVFNNT LQPELMRSVH VYRRGGGEKR EVEREFVFSE SGSYVEMQAT 60 PIPGLVKSRV SEVCEGHRNG VWLCVFAFHA DHTPQFCRIP RLLLVTRNPK LKMIPNLLDD 120 LHMIYKLNRK EEDRDIAQDS TGEERQGHSN NFQPSRKVFP VLDQDLNFLP YEDYESESPD 180 NETDVESSPG FLVKKKRAPS DLVAKISLSD LVKYFGMPIV EASRNLNVGL TVLKRKCREF 240 GIPRWPHRKI KSLDSLIHDL QEEAKNQELE DREAAMAVAK RQRMLESEKE NIEKKPFMDI 300 KIETKRFRQD VFKRRHRARA VEKHNSTVSS T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28927	0.0	cotyledon\| seed coat\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G085500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090377	0.0	BT090377.1 Soybean clone JCVI-FLGm-4G14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237096.2	0.0	RWP-RK domain-containing protein
Refseq	XP_028188106.1	0.0	protein RKD5-like
Swissprot	O81791	6e-91	RKD5_ARATH; Protein RKD5
TrEMBL	A0A0R0HMB1	0.0	A0A0R0HMB1_SOYBN; Uncharacterized protein
TrEMBL	A0A445HYQ7	0.0	A0A445HYQ7_GLYSO; Protein RKD5
STRING	GLYMA01G36360.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-82	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.11G085500.1.p
Entrez Gene	100306328

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]