PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G083900.1.p | ||||||||
Common Name | GLYMA_11G083900, LOC100820357 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 147aa MW: 16298.2 Da PI: 8.5084 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125 | 3e-39 | 56 | 131 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+++C ++ls ak+y+rrhkvCe h+kapvvlvs ++qrfCqqCs+fhel efD++krsCr+ La+hnerrrk++ Glyma.11G083900.1.p 56 CQADECGVNLSMAKSYNRRHKVCERHAKAPVVLVSSIRQRFCQQCSKFHELAEFDDTKRSCRKTLAGHNERRRKAR 131 *************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.7E-30 | 49 | 117 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.308 | 53 | 130 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.98E-36 | 55 | 134 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-31 | 56 | 129 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MAKTPSEEER EMDNGNDEEG GEGEVGAKMV QNIKIKLVCG KDSGSRTASS SSHSFCQADE 60 CGVNLSMAKS YNRRHKVCER HAKAPVVLVS SIRQRFCQQC SKFHELAEFD DTKRSCRKTL 120 AGHNERRRKA RIDVSLGGGE QHQSHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-31 | 47 | 129 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G083900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 4e-56 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538904.1 | 1e-105 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Refseq | XP_028187540.1 | 1e-105 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q6Z461 | 6e-36 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A445HYY1 | 1e-103 | A0A445HYY1_GLYSO; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | K7LNN2 | 1e-103 | K7LNN2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G08905.1 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 5e-35 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G083900.1.p |
Entrez Gene | 100820357 |