PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G068400.1.p
Common NameGLYMA_11G068400, LOC100790046
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 125aa    MW: 14431.1 Da    PI: 6.9588
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G068400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071357244
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +rWT e  +l+ +a + + ++   +W+ Ia  +g g t+ q+k  +
  Glyma.11G068400.1.p 13 LRWTSEKNKLFENALAIYDKDtpeRWNNIAMFVG-GTTEVQVKRQY 57
                         79********************************.********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.7E-51163IPR001005SANT/Myb domain
CDDcd001678.79E-61461No hitNo description
SuperFamilySSF466893.74E-111469IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MTTSTLSSPD TSLRWTSEKN KLFENALAIY DKDTPERWNN IAMFVGGTTE VQVKRQYEIL  60
LEDIKNIESG KVPLPAYTRN AGCSKLNISS AEQRLRDLKL WRKNDFQSEE EHHFSRTHFS  120
IDHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-27151001192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G068400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073014e-74AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590687.11e-89protein RADIALIS-like 1
SwissprotF4JVB81e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0R0HPY03e-88A0A0R0HPY0_SOYBN; Uncharacterized protein
TrEMBLA0A445HY113e-88A0A445HY11_GLYSO; Protein RADIALIS-like 1
STRINGGLYMA11G07310.14e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-32RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]