PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G065000.1.p
Common NameGLYMA_11G065000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 370aa    MW: 39746 Da    PI: 6.0046
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G065000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.85e-23287349163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elk+++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++ ++e++kl+se+
  Glyma.11G065000.1.p 287 ERELKKQKRKQSNRESARRSRLRKQAECEELQKRVESLGSENQTLREELQRVSEECKKLTSEN 349
                          89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.2E-2826119IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.0E-18282346No hitNo description
SMARTSM003382.1E-21287351IPR004827Basic-leucine zipper domain
PfamPF001703.6E-20287349IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.082289352IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.3E-11290346No hitNo description
CDDcd147021.47E-23292342No hitNo description
PROSITE patternPS000360294309IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPLPLGLPPH PLSLRHGNSF FELIWMGTGE ESTAKVPKPS STSSIQIPLA PSYPDWSSSM  60
QAYYAPGATP PAFFASNIAS PTPHSYMWGS QHPLIPPYST PVPYPAIYPP GNVYAHPSMA  120
MTLSTTQNGT EFVGKGSDEK DRVSAKSSKA VSANNGSKAG DNGKASSGPR NDGTSQSAES  180
GSEGSSDASD ENTNQQESAT NKKGSFDQML VDGANARNNS VSIIPQPGNP AVSMSPTSLN  240
IGMNLWNASP AGDEAAKMRQ NQSSGAVTPP TIMGREVALG EHWIQDEREL KKQKRKQSNR  300
ESARRSRLRK QAECEELQKR VESLGSENQT LREELQRVSE ECKKLTSEND SIKEELERLC  360
GPEAVANLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309RRSRLRK
2303310RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.72560.0cotyledon| hypocotyl| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G065000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYGBFA0.0L01447.1 Glycine max G-box binding factor (GBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590363.10.0G-box binding factor isoform X1
SwissprotP427743e-96GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0R0HQF00.0A0A0R0HQF0_SOYBN; Uncharacterized protein
TrEMBLA0A445HXX00.0A0A445HXX0_GLYSO; G-box-binding factor 1 isoform A
STRINGGLYMA11G06960.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.16e-91G-box binding factor 1
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]
  8. Hong JC, et al.
    Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene.
    Plant J., 1995. 8(2): p. 199-211
    [PMID:7670504]